DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Atg1 and Ulk1

DIOPT Version :9

Sequence 1:NP_001163433.1 Gene:Atg1 / 39454 FlyBaseID:FBgn0260945 Length:855 Species:Drosophila melanogaster
Sequence 2:XP_006249627.1 Gene:Ulk1 / 360827 RGDID:1589743 Length:1057 Species:Rattus norvegicus


Alignment Length:1113 Identity:370/1113 - (33%)
Similarity:482/1113 - (43%) Gaps:346/1113 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 VGEYEYSSKDMLGHGAFAVVYKGRHRKKH-MPVAIKCITKKGQLKTQNLLGKEIKILKELTELHH 67
            ||::|:|.||::||||||||:|||||:|| :.||:|||.||...|:|.||||||||||   ||.|
  Rat    11 VGKFEFSRKDLIGHGAFAVVFKGRHREKHDLEVAVKCINKKNLAKSQTLLGKEIKILK---ELKH 72

  Fly    68 ENVVALLDCKESQDCVSLVMEYCNGGDLADYLSVKGTLSEDTVRLFLVQLAGAMKALYTKGIVHR 132
            ||:|||.|.:|..:.|.|||||||||||||||....|||||||||||.|:||||:.|::|||:||
  Rat    73 ENIVALYDFQEMANSVYLVMEYCNGGDLADYLHTMRTLSEDTVRLFLQQIAGAMQLLHSKGIIHR 137

  Fly   133 DLKPQNILLSHNYGKTLPAPSKITLKIADFGFARFLNEGAMAATLCGSPMYMAPEVIMSLQYDSK 197
            |||||||||| |.|.....||.|.:|||||||||:|....|||||||||||||||||||..||.|
  Rat   138 DLKPQNILLS-NPGGRRANPSNIRVKIADFGFARYLQSNMMAATLCGSPMYMAPEVIMSQHYDGK 201

  Fly   198 ADLWSLGTIVYQCLTGKAPFYAQTPNELKSYYEQNANLAPKIPSGVSPDLRDLLLCLLRRNSKDR 262
            |||||:||||||||||||||.|.:|.:|:.:||:|..|.|.||...|..||.|||.||:||.|||
  Rat   202 ADLWSIGTIVYQCLTGKAPFQASSPQDLRLFYEKNKTLVPAIPRETSAPLRQLLLALLQRNHKDR 266

  Fly   263 ISYESFFVHRFLQGKKAAVSPGEPSQAANLRRRVSKSGVLPVDMPPLGGTPPAKAKSPLQQQLEQ 327
            :.::.||.|.||.    |.:|            :.||..:||...|..|:..:.:.|........
  Rat   267 MDFDEFFHHPFLD----ASTP------------IKKSPPVPVPSYPSSGSGSSSSSSSASHLASP 315

  Fly   328 ELKLVKLAEQQQKEREEQEAQEDENTVSVVANPAICATITNVGVLCDSENNSGSCSSHEDSDDFV 392
            .    .|.|..|.::             .:.:||..|     |.|..|.::.||.....|:||||
  Rat   316 P----SLGEMPQLQK-------------TLTSPADAA-----GFLQGSRDSGGSSKDSCDTDDFV 358

  Fly   393 LVPKNLPEDQRQGLAQVQAQP----------------ASGGQRPQQQQNQSSPPRPSSLP----- 436
            :||...|.|.....|..:..|                .|.|:.|......||.|.||..|     
  Rat   359 MVPAQFPGDLVPEAASAKPPPDSLLCSGSSLVASAGLESHGRTPSPSPTCSSSPSPSGRPGPFSS 423

  Fly   437 ----ISEPKPVP--------------APARRQVAR------------------------------ 453
                .|.|.|||              :|.::|.||                              
  Rat   424 NRYGASVPIPVPTQVHNYQRIEQNLQSPTQQQTARSSAIRRSGSTSPLGFGRASPSPPSHTDGAM 488

  Fly   454 --------------PGP-----LTVATL----GGQQIPRSQPISVKQPRPDQRKSSVS------- 488
                          |.|     |.|.|:    ...::|..|...|:..|..:..|||.       
  Rat   489 LARKLSLGGGRPYTPSPQATLFLPVGTIPERPSWSRVPSPQGADVRAGRSPRPGSSVPEHSPRTT 553

  Fly   489 ------------SDIN----------------SISPP---------------------------- 497
                        ||.:                :.|||                            
  Rat   554 GLGCRLHSAPNLSDFHVVRPKLPKPPTDPLGATFSPPQTSAPQPCPGLQSCRPLRGSPKLPDFLQ 618

  Fly   498 ---------------------------------AVQFAIGTPP---------------------- 507
                                             |.|..:.|||                      
  Rat   619 RSPLPPILGSPTKAGPSFDFPKAPSSQSLLTLLARQGVVMTPPRNRTLPDLSEAGPFQGQQLGSG 683

  Fly   508 ------TR----------------MRSASG---------GSLSETPPPHAPSTWQVSPGHSQSPL 541
                  ||                :::|.|         .||.|.|...|||   ...|.:..|.
  Rat   684 LRPAEDTRGPFGRSFSTSRLTDLLLKAAFGTQASDSGSTDSLQEKPMEIAPS---AGFGGTLHPG 745

  Fly   542 RRSGNSSPVLPSAALTKLPTLGSP-----------TMLVAPGSLGSIGSAGSGSENNNQHHMLGP 595
            .|:|.:|...|...     |:|||           |.:.:.||..|:||.||.|    ..|::..
  Rat   746 ARAGGASSPAPVVF-----TVGSPPSGTTPPQSTRTRMFSVGSSSSLGSTGSSS----ARHLVPG 801

  Fly   596 RAFTLPELGATGGLHSLLDTGAGGGGEPHAFQAPELSEETLMDREHNETLSKLNFVLALTDCIQE 660
            .....|||.|.|...||.|..|........|:||:|.|||||::||.|||..|.|.||....:.|
  Rat   802 ACAEAPELSAPGYCCSLADPLAANLEGAVTFEAPDLPEETLMEQEHTETLHSLRFTLAFAQQVLE 866

  Fly   661 VADSRCAPLSTFMVAGSQSAAQAA---------SADAQQIPPHAPEHCKRAERLVLLVRGLQLLS 716
            :|            |...||::||         |..|.||...:.| ...||:|||.::..:|||
  Rat   867 IA------------ALKGSASEAAGGPEYQLQESVVADQISQLSRE-WGFAEQLVLYLKVAELLS 918

  Fly   717 SGMNLASQQLSNGQLKPSSNVKNALLTMNAKYRSMLFESKRLNGSGLLQKANAF----------- 770
            ||:..|..|:..|:|..||.||..:..:|..|::.:     ::..||..:...|           
  Rat   919 SGLQTAIDQIRAGKLCLSSTVKQVVRRLNELYKASV-----VSCQGLSLRLQRFFLDKQRLLDGI 978

  Fly   771 -NITADKILYDYALDMCQAAALDELLKNTKNCFERYNTAHILLHSLVQKCNHPQDKMMLNKYRDA 834
             .:||::::..:|:.|.|:|||||:.::.::|..||:.|.:||..|........|...:.|.:..
  Rat   979 HGVTAERLILSHAVQMVQSAALDEMFQHRESCVPRYHKALLLLEGLQHTLTDQADIENIAKCKLC 1043

  Fly   835 VEKRLSIL 842
            :|:|||.|
  Rat  1044 IERRLSAL 1051

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Atg1NP_001163433.1 S_TKc 9..274 CDD:214567 177/265 (67%)
STKc_ULK1_2-like 15..273 CDD:271022 174/258 (67%)
DUF3543 638..844 CDD:288883 68/226 (30%)
Ulk1XP_006249627.1 STKc_ULK1 13..279 CDD:271104 179/269 (67%)
S_TKc 16..278 CDD:214567 177/265 (67%)
DUF3543 844..1051 CDD:288883 67/224 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166338206
Domainoid 1 1.000 347 1.000 Domainoid score I1007
eggNOG 1 0.900 - - E1_KOG0595
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 492 1.000 Inparanoid score I1356
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1084750at2759
OrthoFinder 1 1.000 - - FOG0002616
OrthoInspector 1 1.000 - - otm46344
orthoMCL 1 0.900 - - OOG6_104561
Panther 1 1.100 - - O PTHR24348
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1024
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.760

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