DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG42709 and LRRTM4

DIOPT Version :9

Sequence 1:NP_001163434.1 Gene:CG42709 / 39453 FlyBaseID:FBgn0261674 Length:458 Species:Drosophila melanogaster
Sequence 2:NP_001317299.1 Gene:LRRTM4 / 80059 HGNCID:19411 Length:591 Species:Homo sapiens


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42709NP_001163434.1 LRR_8 126..182 CDD:290566
leucine-rich repeat 128..147 CDD:275380
leucine-rich repeat 148..171 CDD:275380
LRR_RI <150..225 CDD:238064
LRR_8 171..254 CDD:290566
leucine-rich repeat 172..195 CDD:275380
leucine-rich repeat 196..219 CDD:275380
leucine-rich repeat 220..243 CDD:275380
leucine-rich repeat 244..268 CDD:275380
LRRTM4NP_001317299.1 leucine-rich repeat 44..62 CDD:275380
leucine-rich repeat 65..87 CDD:275380
LRR_RI <85..291 CDD:238064
LRR_8 87..146 CDD:290566
leucine-rich repeat 88..111 CDD:275380
leucine-rich repeat 112..135 CDD:275380
LRR_8 134..194 CDD:290566
leucine-rich repeat 136..159 CDD:275380
leucine-rich repeat 160..183 CDD:275380
leucine-rich repeat 184..207 CDD:275380
leucine-rich repeat 208..231 CDD:275380
LRR_8 231..290 CDD:290566
leucine-rich repeat 232..255 CDD:275380
leucine-rich repeat 256..279 CDD:275380
leucine-rich repeat 304..316 CDD:275378
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.