DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42709 and lgi1

DIOPT Version :9

Sequence 1:NP_001163434.1 Gene:CG42709 / 39453 FlyBaseID:FBgn0261674 Length:458 Species:Drosophila melanogaster
Sequence 2:NP_001072366.1 Gene:lgi1 / 779819 XenbaseID:XB-GENE-954918 Length:547 Species:Xenopus tropicalis


Alignment Length:293 Identity:63/293 - (21%)
Similarity:100/293 - (34%) Gaps:86/293 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    93 CPRNCLCLEDFKFVQCANA-------------------HLTHVP----LDMPKTAAIIDLSHNVI 134
            ||..|.|.:|...  |.||                   ..|.:|    |.:|....:: .:.|..
 Frog    37 CPIWCTCTKDNAL--CENAKSIPRTFLPDVISLSFVRSEFTEIPEGSFLHIPSLQLLL-FTSNAF 98

  Fly   135 AELRPEDFANLSRAVEINLNHNLISSIDKDVFQGSERLKRLRLANNRLTKIDPDTFAAAKELTLL 199
            ..:..:.|..|.....:.:.:|.|.||.::.|:|.:.|..|.||||.|..:..|.|.....||.:
 Frog    99 DAISDDAFTGLPHLEYLFIENNKIKSISRNAFRGLKSLIHLSLANNNLQSLPKDVFKGLDSLTNV 163

  Fly   200 DLSNNTITQRLDGSFLNQPDLVEFSCVNC------SWTELPEQTFQNM--------SGLEVLRLN 250
            ||..|.                 |.| :|      .|.:....|.:.:        .|.::..|:
 Frog   164 DLRGNA-----------------FHC-DCKLKWLVEWLDKTNATVEQIHCESPPEYKGRKINSLS 210

  Fly   251 KNDFKQQINTKAFSPLTKIIKLKLPELEQQNIEELCSLLTSIDTISFLNYDISCYEFVLGTPFNG 315
            ..||  ...|..|:        ....|..|::        |:||.:::|.:.    .|:..||.|
 Frog   211 AKDF--DCITTEFA--------AYKSLPYQSL--------SVDTFTYMNDEY----VVIAQPFTG 253

  Fly   316 SLIY----PTEPPLKGITNPPIVASITSTAKPV 344
            ..|:    ..|...:...|  |..:.|...||:
 Frog   254 KCIFLEWDHVEMSFRNYDN--ITGTSTVVCKPI 284

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42709NP_001163434.1 LRR_8 126..182 CDD:290566 15/55 (27%)
leucine-rich repeat 128..147 CDD:275380 3/18 (17%)
leucine-rich repeat 148..171 CDD:275380 6/22 (27%)
LRR_RI <150..225 CDD:238064 21/74 (28%)
LRR_8 171..254 CDD:290566 21/96 (22%)
leucine-rich repeat 172..195 CDD:275380 9/22 (41%)
leucine-rich repeat 196..219 CDD:275380 5/22 (23%)
leucine-rich repeat 220..243 CDD:275380 5/36 (14%)
leucine-rich repeat 244..268 CDD:275380 5/23 (22%)
lgi1NP_001072366.1 leucine-rich repeat 66..87 CDD:275378 3/20 (15%)
LRR_8 87..146 CDD:338972 15/59 (25%)
leucine-rich repeat 88..111 CDD:275378 3/23 (13%)
leucine-rich repeat 112..135 CDD:275378 6/22 (27%)
leucine-rich repeat 136..159 CDD:275378 9/22 (41%)
PCC 141..>216 CDD:188093 21/94 (22%)
leucine-rich repeat 160..172 CDD:275378 6/28 (21%)
EPTP 221..260 CDD:367630 12/58 (21%)
EPTP 267..305 CDD:367630 5/20 (25%)
EPTP 313..357 CDD:367630
EPTP 362..402 CDD:367630
EPTP 409..449 CDD:367630
EPTP 455..494 CDD:367630
EPTP 501..540 CDD:367630
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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