DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG42709 and 2mit

DIOPT Version :9

Sequence 1:NP_001163434.1 Gene:CG42709 / 39453 FlyBaseID:FBgn0261674 Length:458 Species:Drosophila melanogaster
Sequence 2:NP_001262529.1 Gene:2mit / 41616 FlyBaseID:FBgn0260793 Length:1155 Species:Drosophila melanogaster


Alignment Length:543 Identity:100/543 - (18%)
Similarity:159/543 - (29%) Gaps:218/543 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 LCLEDF---KFVQCANAHLTHVPLDMPKT-----AAIIDLSHNVIAELRPEDFA-NLSRAVEINL 153
            |.|::|   :.:...|..|..:||.:..|     ...:|||.|..:::....|| .|.:...:||
  Fly   136 LSLDNFNQLRQLDLGNNSLEVIPLSLADTNMSLPFVTLDLSCNKFSQISTSFFAQRLPQLKNLNL 200

  Fly   154 NHNLISSIDKDVFQGSERLKRLRLANNRLTKIDPDTFAAAKELTLLDLSNNTITQRLDGSFLNQ- 217
            .||.:.:|.::.|.....|:.|.|::|.::.||.:||.|...|..||||:|    ||.||.:.. 
  Fly   201 AHNELLNISRESFYNLLELQTLVLSHNNISDIDYETFLALPNLQYLDLSHN----RLSGSAIRAL 261

  Fly   218 ---PDLVEFS----------------------------------------------------CVN 227
               ||||..|                                                    .:|
  Fly   262 QGIPDLVSLSIAYNPDVGVAMQEFVASWSLKELDASGTGLCQVPAALAQSVRTLKLSDNWLKAIN 326

  Fly   228 C--------------------------------------------------------------SW 230
            |                                                              ..
  Fly   327 CGDMDSYPLLQYLDLSHSRIAQVEDDALGRLELLESLFLDRNLLMRVPSSLPPSLEHLFLQHNQI 391

  Fly   231 TELPEQTFQNMSGLEVLRLNKNDFKQQINTKAFSPLTKIIKLKLPELEQQNIEEL---------- 285
            .|||.|.|..:..|:.|.|:.|..       .|.|...:.||....||...:|.:          
  Fly   392 MELPPQAFVGLVNLQTLDLSNNRL-------IFLPPLSLPKLLTLNLESSGVESVSQSIVHTLPQ 449

  Fly   286 ------------CSLLTSI----------------------------DTISFLNY--DISCYEFV 308
                        ||.|..|                            :.:.|.|:  :.|..|..
  Fly   450 LRDLLLEDNPIKCSDLLGIAEWASPCRSVDAGQSNGASVSGRVDLKTEYLQFHNFYENFSSRECG 514

  Fly   309 LGTPFNGSLIYPTEPPLKGITNPPIVASITSTAKPVTATPAPPRSANRNRGKMDNSTELVKAGIL 373
            :..|.|     .|:||         ..|:|..:..:|.||.......:::.....:|.:..|...
  Fly   515 IRKPEN-----DTKPP---------SCSLTRASATLTTTPRSMSKVEKSQEAQATATSVEVAAAT 565

  Fly   374 SSETSTSGVSVEPPAESQTNQVQISQEAINTL----LICIMVLAVIGIVIGLICRQDIGGI---- 430
            ::.:..:|:.....|:|........:|||.|.    ......||....:      |..|.|    
  Fly   566 AATSEKTGIQATSAAQSTAAATTAEREAIATATSSDTTATPTLAAAAAI------QSAGNIPAQL 624

  Fly   431 KTKCCRTSKPEPKDQVHPTEEIP 453
            .||..|.::.....|:...:::|
  Fly   625 TTKTLRPTETTSLAQLQRRQQMP 647

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42709NP_001163434.1 LRR_8 126..182 CDD:290566 17/56 (30%)
leucine-rich repeat 128..147 CDD:275380 7/19 (37%)
leucine-rich repeat 148..171 CDD:275380 6/22 (27%)
LRR_RI <150..225 CDD:238064 30/130 (23%)
LRR_8 171..254 CDD:290566 35/200 (18%)
leucine-rich repeat 172..195 CDD:275380 9/22 (41%)
leucine-rich repeat 196..219 CDD:275380 10/26 (38%)
leucine-rich repeat 220..243 CDD:275380 10/136 (7%)
leucine-rich repeat 244..268 CDD:275380 6/23 (26%)
2mitNP_001262529.1 LRR_RI 124..355 CDD:238064 47/222 (21%)
leucine-rich repeat 124..143 CDD:275380 3/6 (50%)
leucine-rich repeat 144..167 CDD:275380 5/22 (23%)
leucine-rich repeat 172..194 CDD:275380 7/21 (33%)
LRR_8 193..253 CDD:290566 21/63 (33%)
leucine-rich repeat 195..218 CDD:275380 6/22 (27%)
leucine-rich repeat 219..242 CDD:275380 9/22 (41%)
LRR_8 241..301 CDD:290566 15/63 (24%)
leucine-rich repeat 243..311 CDD:275380 15/71 (21%)
leucine-rich repeat 312..335 CDD:275380 2/22 (9%)
LRR_8 334..415 CDD:290566 9/80 (11%)
leucine-rich repeat 336..359 CDD:275380 0/22 (0%)
leucine-rich repeat 360..380 CDD:275380 0/19 (0%)
LRR_8 379..460 CDD:290566 16/87 (18%)
LRR_4 379..>415 CDD:289563 9/35 (26%)
leucine-rich repeat 381..404 CDD:275380 5/22 (23%)
leucine-rich repeat 405..449 CDD:275380 11/50 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45453550
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

Return to query results.
Submit another query.