Protein Alignment CG42709 and rdo

DIOPT Version :10

• Sequence 1: NP_648600.1
• Gene: CG42709 / 39453
• FlyBaseID: FBgn0261674
• Length: 458
• Species: Drosophila melanogaster
• Sequence 2: NP_001286024.1
• Gene: rdo / 35077
• FlyBaseID: FBgn0243486
• Length: 757
• Species: Drosophila melanogaster
• Alignment Length: 524
• Identity: 105/524 - (20%)
• Similarity: 183/524 - (34%)
• Gaps: 163/524 - (31%)

  Fly    11 LIFLLSVSISHTNAAPAGSEEANPLEDFNYGDDDYSETATGEESPETAENRLMPQSSSTSTTTTF 75
            |.:|..:.:|..|.       .|..|:...|.|:..|.       :.::|:::..:||     ||
  Fly   105 LKYLRILDLSKNNI-------TNITENNFRGQDNLLEL-------DLSKNKVLRMASS-----TF 150

  Fly    76 RPIFNIPR---RSNHVLEPSCPRNCLCLEDFKFVQCANAHLTHVPLDMPKTAAIIDLSHNVIAEL 137
            |.:.::.|   ..|.::| ...||...|...|:                     :|||.|.:.:|
  Fly   151 RHLTDLRRLNLADNSIVE-LVQRNFFMLSRLKY---------------------LDLSGNPLQDL 193

  Fly   138 RPEDFAN------------------------LSRAVEINLNHNLISSIDKDVFQGSERLKRLRLA 178
            :|:.|.:                        |....|::|..|....:|||.|:..:||.::.|.
  Fly   194 QPDVFRDVPELKVLKCRNCQLKKINPQMYNLLPLLSELDLGRNEFKFLDKDEFRDVKRLTKVLLD 258

  Fly   179 NNRLTKIDPDTFAAAKELTLLDLSNNTITQRLDGSFLNQPDLVEFSCVNCSWTELPEQTFQNMSG 243
            .|:|:.:....|...|.|..||||.|.:.:..:.|||...:|............|..|:.:::|.
  Fly   259 GNQLSVVVDQLFRMQKSLNHLDLSYNRLAKVPNDSFLQLTNLTFLDLSYNKLVRLEPQSIRSLSN 323

  Fly   244 LEVLRLNKN---DFKQQINTKAFSPL--------TKIIKLKLPELEQQNIEEL----CSLLTSID 293
            |..|.::.|   |.::...|  |.||        :|:....:|:|....|.::    ..||....
  Fly   324 LLTLNISGNVLMDLREMRET--FEPLIYYFFLTCSKLFFQLIPQLTHLAIADMGTMPVGLLHPFK 386

  Fly   294 TISFLNYDISCYEFVLGTPFNGSLIYPTEP------------PLKGIT----------------N 330
            .:.:||        :.|...|.:.:...:|            .|.||:                |
  Fly   387 QLRYLN--------ISGNSLNNTALEVIDPCRELEFLDLSRNQLHGISEDTVLRIQGIRNVRLDN 443

  Fly   331 PPIVASITSTAK---------------PVTATPAPPRSANRNRGKMDNSTELVKAGILSSETSTS 380
            .|::.......|               |:...|...|.|           |:....|....|..:
  Fly   444 NPLICDECHMGKLINVVRQLQWKWDTYPICFLPKSLRGA-----------EINNLDINGLHTCLT 497

  Fly   381 GVSVEPPAESQTNQVQISQEAINTLLI---CIMVLAVIGIVIGLIC-----------RQD-IGGI 430
            .::.|....:.|:...:....:|||.|   .|.||..: |::.|:.           |:| :.|.
  Fly   498 FITDEEQNAASTSYNFLEHGGLNTLAILGGIIFVLIAV-IILSLVACFSKNRARYYTREDHLNGS 561

  Fly   431 KTKC 434
            ::||
  Fly   562 ESKC 565

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG42709	NP_648600.1	LRR	<127..>300	CDD:443914	50/211 (24%)
		leucine-rich repeat	128..147	CDD:275380	8/42 (19%)
		leucine-rich repeat	148..171	CDD:275380	7/22 (32%)
		leucine-rich repeat	172..195	CDD:275380	5/22 (23%)
		leucine-rich repeat	196..219	CDD:275380	9/22 (41%)
		leucine-rich repeat	220..243	CDD:275380	3/22 (14%)
		leucine-rich repeat	244..268	CDD:275380	8/34 (24%)
rdo	NP_001286024.1	LRR	69..>446	CDD:443914	80/391 (20%)
		leucine-rich repeat	84..107	CDD:275380	1/1 (100%)
		leucine-rich repeat	108..131	CDD:275380	6/29 (21%)
		leucine-rich repeat	132..155	CDD:275380	7/34 (21%)
		leucine-rich repeat	156..179	CDD:275380	6/23 (26%)
		leucine-rich repeat	180..203	CDD:275380	8/43 (19%)
		leucine-rich repeat	204..251	CDD:275380	8/46 (17%)
		leucine-rich repeat	252..275	CDD:275380	5/22 (23%)
		leucine-rich repeat	276..299	CDD:275380	9/22 (41%)
		leucine-rich repeat	300..323	CDD:275380	3/22 (14%)
		leucine-rich repeat	388..411	CDD:275380	5/30 (17%)