DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG42709 and Lrtm2

DIOPT Version :10

Sequence 1:NP_648600.1 Gene:CG42709 / 39453 FlyBaseID:FBgn0261674 Length:458 Species:Drosophila melanogaster
Sequence 2:NP_766080.1 Gene:Lrtm2 / 211187 MGIID:2141485 Length:370 Species:Mus musculus


Alignment Length:347 Identity:81/347 - (23%)
Similarity:134/347 - (38%) Gaps:75/347 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 PSCPRNCLCLEDFKFVQCANAHLTHVPLDMPKTAAIIDLSHNVIAELRPEDFANLSRAVEINLNH 155
            |:||.:|.|......|.|:...||.||.|:|.....:.|.:|.::.|....|||||....::|::
Mouse    37 PACPFSCTCDSRSLEVDCSGLGLTTVPPDVPAATQSLLLLNNKLSALPSWAFANLSNLQRLDLSN 101

  Fly   156 NLISSIDKDVFQGSERLKRLRLANNRLTKIDPDTFAAAKELTLLDLSNNTITQRLDGSFLNQPDL 220
            |.:..:.:.:|:....|..|:|.||.:..:|.|....:..|..||||.|.:.|...|.|.....|
Mouse   102 NFLDQLPRSIFEDLVNLTELQLRNNSIRTLDRDLLQHSPLLRHLDLSINGLAQLPPGLFDGLLAL 166

  Fly   221 VEFSCVNCSWTELPEQTFQNMSGLEVLRLNKNDFKQQINTKAFSPLTKIIKLKLPELEQQNIEEL 285
            ...|..:.....|...||:.::.|::|::..|.::...|.:.|....:....:...|:|.    .
Mouse   167 RSLSLRSNRLQSLDRLTFEPLASLQLLQVGDNPWECDCNLREFKHWLEWFSYRGGRLDQL----A 227

  Fly   286 CSL---LTSID----TISFLNYDISCYEFVLGTPFNGSLIYPTEPPLKGITNPPIVASITSTAKP 343
            |:|   |...|    .:...||   |.:                  |:...|.   |.:.:...|
Mouse   228 CTLPKELRGKDMRAVPMEMFNY---CSQ------------------LEDENNS---AGLDAPGPP 268

  Fly   344 VT-ATPAPPRSANRNRGKMDNSTELVKAGILSSETSTSGVSVEP------PAESQTNQVQISQEA 401
            .| |:|.||:                         ...|...||      |.:.:...|.: :.|
Mouse   269 CTKASPEPPK-------------------------PKPGAEPEPEPSTACPQKQRYRPVSV-RRA 307

  Fly   402 INTLLICIMVLAVIGIVIGLIC 423
            |.|::|.       |:|.|::|
Mouse   308 IGTVIIA-------GVVCGIVC 322

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42709NP_648600.1 LRR <127..>300 CDD:443914 43/179 (24%)
leucine-rich repeat 128..147 CDD:275380 7/18 (39%)
leucine-rich repeat 148..171 CDD:275380 3/22 (14%)
leucine-rich repeat 172..195 CDD:275380 7/22 (32%)
leucine-rich repeat 196..219 CDD:275380 9/22 (41%)
leucine-rich repeat 220..243 CDD:275380 5/22 (23%)
leucine-rich repeat 244..268 CDD:275380 5/23 (22%)
Lrtm2NP_766080.1 LRRNT 38..67 CDD:396168 11/28 (39%)
leucine-rich repeat 51..93 CDD:275378 15/41 (37%)
LRR 1 69..90 4/20 (20%)
LRR_8 92..152 CDD:404697 17/59 (29%)
LRR 2 93..114 3/20 (15%)
leucine-rich repeat 94..117 CDD:275378 3/22 (14%)
LRR 3 117..138 7/20 (35%)
leucine-rich repeat 118..141 CDD:275378 7/22 (32%)
LRR 4 141..162 9/20 (45%)
leucine-rich repeat 142..189 CDD:275378 14/46 (30%)
LRR 5 165..186 5/20 (25%)
leucine-rich repeat 166..186 CDD:275380 5/19 (26%)
leucine-rich repeat 190..202 CDD:275378 3/11 (27%)
LRRCT 198..247 CDD:214507 9/52 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 260..297 11/61 (18%)
PHA03264 <261..335 CDD:223029 19/95 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 351..370
Blue background indicates that the domain is not in the aligned region.

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