Sequence 1: | NP_729825.2 | Gene: | Vps13D / 39448 | FlyBaseID: | FBgn0052113 | Length: | 3919 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001320409.1 | Gene: | AT1G48090 / 841226 | AraportID: | AT1G48090 | Length: | 4173 | Species: | Arabidopsis thaliana |
Alignment Length: | 4709 | Identity: | 872/4709 - (18%) |
---|---|---|---|
Similarity: | 1607/4709 - (34%) | Gaps: | 1597/4709 - (33%) |
- Green bases have known domain annotations that are detailed below.
Fly 9 VLNTYLGKYLENLNSAQLSVALLSGEVELENIPIRKDALRSFNLPVEVTAGSIRKIKLQIPVRQF 73
Fly 74 RTSPWCISIEGLFCIICP----KNLDNWDYEK---EKLQDLEYKLAVLDTAEAGWRSEKGKQMES 131
Fly 132 YYFSSYNNWLKYGTNMATNIIDNIELKISDVHFRFEDIVDTGKSKICTGIKIGSLTAQSCDCDW- 195
Fly 196 ----TNGS--------------YKMNNN-EMNYKL--VELKELSVY-------------WD---- 222
Fly 223 -----LLHEDIKCQSYSNQEILEKMHSTCELRSHNFIIKPICATARWKRDKCQQVIRTKDKPRVS 282
Fly 283 CE---LLVPEVVIDISKVQRLQMLDKLSEIRQVKEVRQYRLKRPTCTVESNPIAWWKYAT----- 339
Fly 340 ---ICHGFDFKKNEEKWLMLKENLRYMLLYKSIILNPNENLSAADKEFKAYIESDRKISDLTIMR 401
Fly 402 RICFEKVFTKGFAFESQNEQGKNMLFHWFP-NWMGWYANSPSTPNNEQDESL--KHLEDDILVAL 463
Fly 464 ENSLQNSSDLKSDAVFG-------HFSIKLLKG------LVILQTEDKLNDGRNKSMEM--QFNN 513
Fly 514 FSAYLQLSPQLTSYTVGISLQEVYLIDKTSSDTMHNYLIKPQTGNTATPNQLVKNAALQEDILFQ 578
Fly 579 LQ--YENCNHLRFQLNIKSKGLDLIYNEDAIQWLLDFLADSNSFKYSPRNRVAKKTDFMKNWNEM 641
Fly 642 FSGNEVNRKI-------------WMFEIEIFAP--RIIFLENYKVSNSLMVLLDFGKLEMRKMEV 691
Fly 692 KRVIPVIESAVTEN-------TSDDDETYLTPCSTPPASEKSGSE------------SPTLLENP 737
Fly 738 KTESFLNK---------------------------NV-------------QLEYVLHN--KIYDK 760
Fly 761 YLINF--------------TNLQVLVCK----YEERWQACLKTSSNFHL--------IDKFNINL 799
Fly 800 TLEQRNIFTVDPE----YPSFMLFGTCPT-------------ILIHGNEE------LINNCCNIM 841
Fly 842 KPI-------------------IKASKEMENIYRGG---NTIYASERIKNLAEDDRSRVVIEFVM 884
Fly 885 DQLVIEMQSTERSIAELQIIGARAGLTKEPHETNISMSVHGLLLVDAIQ---------------- 933
Fly 934 ------------SFGPDFELLVASHRHVGMDSLSGSLKHSAIVSPTSPGSPNFFDRATSPHMITK 986
Fly 987 AVQNIKMGDRSTEF-----------CDD---EDSTALISVDIKIVPPNESNSMQLHT-----TSI 1032
Fly 1033 TFNSLDIIANQDTIIEILNFAKRTLLAQ--------NIFPSESPESPKEATEAPVDVVDQVDHKS 1089
Fly 1090 HNEIFFDFFRLNILLLYTIKRDKFNVGRKVGTVTLTEAKINASFQSDLSIIGSLGGIQVIDITSE 1154
Fly 1155 A------FCHPRILSVGRDQILRASDTNKQTVLSQLSNEIYSNNYNEETKSDESDAISFQSHWSD 1213
Fly 1214 KTTCTFQMRMASASYTHCPRFLRDVNACITYFKRSLREFATSIGNKATDMAKEFVQQVRAVEQIG 1278
Fly 1279 PV--YPQRNRQDN----WLDIIISSPIIILPISNTSTNVLIANLGKISCSNAVKCDSDEFNESYT 1337
Fly 1338 IEIKNTYVYSLNIDEGEYSFNVHPAKNKDA--IPILHDTAITLQLYAGYSDD------------- 1387
Fly 1388 -------NDEDKQLNRFSIKGSMVEALKVSLNRKQYELLLESIRYATNFSNEVLNESDEL--DQN 1443
Fly 1444 GD----------IEPTANIDAESIISTTIQFSVPVFQIN-----LQNEYHND--LINLTFKNFNV 1491
Fly 1492 KH-ISKGFDKDVEVVLKSVLMEDLKSDLTSPFRNMV-TSVDLEQKIKKNEM------------TS 1542
Fly 1543 SSCPDLPSYCNSL-----KNRSSSVPSCFYNHMQVKVF---------------------GGDQKY 1581
Fly 1582 TSSNKNELGKKKESQTLVIYKSHTGRSAQNGKLEQTSSIQFNCLNLAICVERWYTIFDFFGL--- 1643
Fly 1644 --------VSVDNVNEKYPEEMKLVEKHIDKVCSKLK-VSIRSFNFTLIRNESLLSRV----NVS 1695
Fly 1696 NAVF--------MILQDPYS---KIVEGCLGSVSVNDLTKYGNIYKQKFL--------------- 1734
Fly 1735 -------TSGTEAL-------NFVYKKKLVDL--------------EALNTLD--------TDST 1763
Fly 1764 LRINMSAVH---YIHTKRFSTELHVFVKDLLQLQTPVIRKL---------------------KKH 1804
Fly 1805 GSEQNM---RP-SKMKLVIQAD----------SPVIVLPSSYNRNEVIIAY--LGQFSL------ 1847
Fly 1848 KNSFHFASDN----------------NIISKMSATPSKDEILDVMRIDLVNINLFSGERSSMKAK 1896
Fly 1897 ADQEK-------DRIIIADMNFLRLGQPFFNES-----CFL--HLQLERNLSADAHRVCPDISVQ 1947
Fly 1948 GTFSKLSG--IINIQQYKLIRSFLNNNIGEQTDDIYMNYHNNSCTSIERLSTINLM-----PKNE 2005
Fly 2006 VSKIVSILISI-----RILLEDVS---------LLLALNTSQSAA-------------------- 2036
Fly 2037 ----IEP-----LACI-HFLKSTLEIDLFSDGSQDIDLIS-SNILIVD-ERNESDKSNE--NVFK 2087
Fly 2088 ------NIL-------EPSKKEVRIENSVQVEVHCRKKATFSKYTIMLNNMRVFALLSFLDQLKS 2139
Fly 2140 YLQEDSPAPVVNNAANQIAQKPQIDTSISTEYVVNITDSEIIFAEECSRLDSNAIILKSTTVICY 2204
Fly 2205 KPNSNIVPLSLDINHLEIFSCTLDAEEESALSIIDPFTLIIELRS------------NCLNILIQ 2257
Fly 2258 KHLNIRLSYVD--------------VKLFSRMARLLPTQTSRPKNVISKADSDLEKAAPL----- 2303
Fly 2304 --VAMGFEISDCLYAMQINN--------WRINDAAIWLSQQKQNTYRNPALEMKTA-------VV 2351
Fly 2352 DASLISVFIIDDCMDADVPLLEVSLSKF-LLNFTFQTQDPNPKE--------------TNIRHYS 2401
Fly 2402 LGNIDTEVSVNYYNRRLSGWEPV------------AETWESNLNWKYTKGHLDNKKRFEIG---- 2450
Fly 2451 ----ISSKQMLKLNVTSTFIELFHMVLKNWTNDFNDNG----AKNFRQRSPFIPFALQNLSGTPL 2507
Fly 2508 LFKPIYAPLGDLTRSDLQQVELIKNWYSVQPNETKTFDFSQKSKLRHVHSHQLNLHQIFVQIHGW 2572
Fly 2573 TLIGPISVDKVGMFFRTTKLDSQFLTKSRIVFDISLIGSAQKLIKVKSSLGVINKLDRNVFLKMT 2637
Fly 2638 LKGTHSDGLSSISVI---------------KPNDE-LSVPLK----------------------- 2663
Fly 2664 --FIDASLYVAHNTSESDAYEDTGF------------------SNEEILWKACGKDDTRQLLAGY 2708
Fly 2709 DTNKSILYTFVNISREIYHCKEQNLPGHKITLLPPLKINNMLCCDLMFKIHEHAT---------G 2764
Fly 2765 RINSSESVNIYNVNICQPLNLSITLDNFQLSGQLKIPVSHRGVIEPKLKLIDI------------ 2817
Fly 2818 -QKRELHVRVSIQSVPG------KGMELYISAPVWIINKTGLPLIYKQ---EGTSHTAAG----- 2867
Fly 2868 ----QFEEH-----------------ETARQVAPLMFSFSDQE--GSPALVLRLGKAYGSNNMWC 2909
Fly 2910 KSFSTHKD----------LADRDLRAENTKGSYAIGISVR--------------RGRGLYAC--- 2947
Fly 2948 -------TTFVTLSPRFHLHNRSGYKLEFMQL-CDIVNYDRP-DPRKIISAPVDCNFAFHWPNWD 3003
Fly 3004 QEQIICVRIPEIECCCWSKGIPIKDVQSLYINVRNEWG-EMFFLRLEIIS--KDATFILLFTDAR 3065
Fly 3066 TLPPPIRIDNCSEVV-INFSQLR--SKPVWITPVRPQSSLSYVMDDPLGQQILLMEAPGGNMIEF 3127
Fly 3128 PINNKNNIKKTLTYTNFIYIAFQGTFERSNEEENTHRQLVLGVRGKKVVIVEKNSGDRSQLWLMN 3192
Fly 3193 SNGQLEHEGSTPPIQTNDANAVRLVLDLEKAP-NPMEFTNLVVRTPNKQRVTTQTWRFENGRLMC 3256
Fly 3257 HANMCVQSRFGESGLKPNYEAVVGRTENRASSSKQIPIGQHIVAQKLRPGSGQLELSTKMDGPIS 3321
Fly 3322 TIEICDIKIKQNSVFLTPDLLWMHASLNNRQITDKGKVSFVHEYLINVELVKGIGISIIARKPCE 3386
Fly 3387 EIMFISLDHINCDIVQSALENSLD---LNIAYIQIDNQLLDAVSPIALHTQTSNDLEETQNAVVL 3448
Fly 3449 KLKMLPSPNK--NAIIFKYLTLDLKPSTA---SLEEKLILKVASFLGYGKINRQN------LSVQ 3502
Fly 3503 YQFENTDDKPFLQDMKRYYFENLSIGATQVRLS-AFTSSKLPVELHETKKALGLTLIKFEDALIE 3566
Fly 3567 LDRYSDKLHFETMDVYRKELKKHYINQVKWHAAAILGSVDFLGNPLGFANDLSEGVSGLIFEGSV 3631
Fly 3632 KSLVKNVTHGISNSTAKLTETLSDSLGKVVLDDHDNETRQRILELQSNTS----GGHLAAGLKGL 3692
Fly 3693 GFGLLGGVTSIVRHTYDGATSDGVPGFLSGLGKGLVGTVTKPIIGVLDLASET---ASAVRETSR 3754
Fly 3755 DSHRNAPE--RKRLPRCVTGAPGGLLPLYSNRQSKGQQYLYLINQKNFSEKIISYEPNLWSDKEA 3817
Fly 3818 RLRLLVSTEYVR-IFSLSDANPTIMFECH 3845 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Vps13D | NP_729825.2 | Chorein_N | 4..112 | CDD:315323 | 33/109 (30%) |
VPS13 | 147..368 | CDD:318996 | 57/275 (21%) | ||
VPS13_mid_rpt | <656..837 | CDD:318998 | 50/292 (17%) | ||
VPS13 | <2039..>2694 | CDD:330393 | 130/823 (16%) | ||
SHR-BD | 2836..3113 | CDD:310922 | 70/349 (20%) | ||
VPS13 | <3346..3802 | CDD:330393 | 124/479 (26%) | ||
AT1G48090 | NP_001320409.1 | None |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR16166 |
Phylome | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 1 | 0.960 | - | - | ||
3 | 3.060 |