Sequence 1: | NP_729825.2 | Gene: | Vps13D / 39448 | FlyBaseID: | FBgn0052113 | Length: | 3919 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001190747.1 | Gene: | AT4G17140 / 827424 | AraportID: | AT4G17140 | Length: | 4219 | Species: | Arabidopsis thaliana |
Alignment Length: | 4636 | Identity: | 815/4636 - (17%) |
---|---|---|---|
Similarity: | 1550/4636 - (33%) | Gaps: | 1449/4636 - (31%) |
- Green bases have known domain annotations that are detailed below.
Fly 1 MLRDLITWVLNTYLGKYLENLNSAQLSVALLSGEVELENIPIRKDALRSFNLPVEVTAGSIRKIK 65
Fly 66 LQIPVRQFRTSPWCISIEGLFCIICP----KNLDNWDYEKEK---LQDLEYKLAVLDTAEAGWRS 123
Fly 124 EKGKQMESYYFSSYNNWLKYGTNMATNIIDNIELKISDVHFRFEDIVDTGKSKICTGIKIGSLTA 188
Fly 189 QSCDCDWTNGSYKMNNNEMNYKLVELKELSVY-------------WDLL--HEDIKCQSYSNQEI 238
Fly 239 LEKMHSTCELRSHNFIIKPICATARWKRDKCQQ---VIRTKDKPRVSCELLVPEVVIDISK---V 297
Fly 298 QRLQMLDKLSEIRQVKEVRQYRLKRPTCTVESNPIAWWKYA--------TICHGFDFKKNEEKWL 354
Fly 355 MLKENLRYMLLYKS--------IILNPNENLSAADKEFKAYIESDRKISDLTIMRRICFEKVFTK 411
Fly 412 GFAFE--SQNEQGKNMLFHWFPNWMGWYANSPSTPNNEQDESLKHLEDD------ILVALENSLQ 468
Fly 469 N-SSDLKSDAVFGHFSIKLLKGLVILQTEDKLNDGRNKSM-EMQFNNFSAYLQLSPQLTSYTVGI 531
Fly 532 SLQEVYLIDKTSSDTMHNYLIKPQTGNTATPNQLVKNAALQEDILFQLQYENCN-HLRFQLNIKS 595
Fly 596 KGLDLIYNEDAIQWLLDFLADSNSFKYSPRNRVAKKTDFMKNWNEMFSGNEVNRKI-----WMFE 655
Fly 656 IEIFAPRIIFLENYKVSN--SLMVLLDFGKLEMR-----------KMEVKRVIPVIESAVTENTS 707
Fly 708 DDDETYLTPCSTPPASEKSGSESPTLL-----------------ENPKTESF------------- 742
Fly 743 ----LNKNVQLEYVLHNKIYDKYLI-------NFTN-LQVLVCK-YEERWQ---ACLKTSSNFHL 791
Fly 792 ID-----KFNINLTLEQRNIFTVDPEYPSFMLFGTCPTILIHGNEEL--INNCCNIMKPIIK--- 846
Fly 847 ---------------ASKEMENIYRG---------GNTIYASERIKNLAED--DRSR---VVIEF 882
Fly 883 VMDQLVI--------------EMQSTERSIAELQIIGARAGLTKEPHETNISMSVHGLLLVDAIQ 933
Fly 934 SFG------------------PDFELLVASHRHVGMDSLSGSLKHSAIVSPT-SPGSPNFFDRAT 979
Fly 980 SPHMITKAVQNIKMGDRSTEFCDDEDSTALISVDIKIV--PPNESNS----------MQLHTTS- 1031
Fly 1032 ----------ITFNSLDIIANQDTIIEILNFAKRTLLAQNIFPSESPESPKEATEAPVDVVDQVD 1086
Fly 1087 HKSHNEIFFDFFRLNILLLYTIKRDKFNVGRKVGTVTLTEAKINASFQSDLSIIGSLG-GIQVID 1150
Fly 1151 ITSEAFCHPRILSVGRDQI-LRASDTNKQTVLSQ---LSN-EIYSNNYNEETK------SDESDA 1204
Fly 1205 ISFQSHW----SDKTTCTFQMRMASASYTHCPRFLRDVNAC---------ITYFKRSLREFA--- 1253
Fly 1254 -----------TSIGNKATDMAKEF----VQQVRAVEQIGPVYPQRNRQDNWLDIIISSPIIILP 1303
Fly 1304 ISNTSTNVLIANLGKISCSNAVKC---DSDEFNESYTIEIKNTYVYSLNIDEGEYS--------- 1356
Fly 1357 -FNVHPAKNKDAIPILHDTAITLQLYAGYSDDNDEDKQLNRFSIKGSM-VEALKVSLNRKQYELL 1419
Fly 1420 LESIRYATN--------FSNEVLNESDELDQNGDIEPTANIDAE----------SII-------- 1458
Fly 1459 ---------STTIQFSVP-------------VFQINL---------------QNEYHNDLINLTF 1486
Fly 1487 KNFNVKHISKGFDKDVEVVLKSVLMEDLKSDLTSPFRNMVTSVDLEQKIKKNEMTSSSCPDLPSY 1551
Fly 1552 CNSLKNRSSSVPSCFYNHMQVKVFGGDQKYTSSNKNELGKKKESQTLVIYKSHTGRSAQNGKLEQ 1616
Fly 1617 TSSIQFNCLNLAICVERWYTIFDFFGLVSVDNVNEKYPEEMKLVEKHI-DKVCSKLKVS---IRS 1677
Fly 1678 FNFTLIRNESLLSRVNVSNAVFMILQDPYSKIVEGCLGSVSVNDLTKYGNIYKQKFLTSGTEALN 1742
Fly 1743 FVYKKKLVDLEALNTLDTDSTLRINMSAVHYIHTKRFSTELHVFVK----DLLQLQTPVIRKLKK 1803
Fly 1804 HGSEQNMRPSKMKLVIQADSPVIVLPSSYNRNEVII---------------AYLGQFSLKN---- 1849
Fly 1850 -SFH---FASDNNIIS---------KMSATPSKDEILDVMRIDLVNINL---FSGERSSMKAKAD 1898
Fly 1899 QEKDRIIIADMNFLRLGQPFFNESCFLHLQLERNLSADAHRVCPDISVQGTFSKLSGIINIQQYK 1963
Fly 1964 LIRSFLNNNIGEQTDDIYMNYHNNSCTSI----ERLSTINLMPKNEVSKIVSILISIRILLEDVS 2024
Fly 2025 LLLALNTSQSAAIEPLACIHFLKSTLEIDLFSDGSQDIDLISSNILIVDERNESDKSNENVFKNI 2089
Fly 2090 LEPSKKEVRIENSVQVEVHCRKKATFSKYTIMLNNMRVFALLSFLDQLKSYLQEDSPA--PVVNN 2152
Fly 2153 AANQIAQKPQIDTSISTEYVVNITDSEIIFAEECSRLDSNAIILKSTTVICYK--PNSNIVPL-- 2213
Fly 2214 ----SLDINH-------LEIFSCTLDAEEESALSIIDPFT---------LII---ELRSNCLNIL 2255
Fly 2256 IQKHLNIRLSYVDVKLFSRMARLLPTQT------SRPKNVI---------SKADSDLEK----AA 2301
Fly 2302 PLVAMGFEISDCLYAMQINNW-RINDAAIWLSQQKQNTY------RNPALEMKTAVVDASL---- 2355
Fly 2356 -----------ISVFIIDDCMDADVPLLEVSLSKFLLNFTFQTQDPNPKETNIRHYSLGNIDTEV 2409
Fly 2410 SVNYYNRRLSGWEPVAETWESNLNWKYTKGHLDNKKRF----EIGISSKQMLKLNVT----STFI 2466
Fly 2467 ELFHMVLKNWTNDFNDNGAKNFRQRSPFIP--------------FAL-QNLSGTPLLF------- 2509
Fly 2510 ------------KPIYAPL----------GDLTRSDLQQVELI-------------KNWYS---- 2535
Fly 2536 VQPNETKTFDFSQKSKLRHVHSHQLNLHQIFVQIHGWTLIGPISVDK------------------ 2582
Fly 2583 VGMFFRTTKLDSQFL---------------------------------------------TKSR- 2601
Fly 2602 --------------------------------------------IVFDISLIGSAQKLIKVKSSL 2622
Fly 2623 GVINKLDRNVFLKMTLKG-THSDGLSSISVIKPNDELSVPLKFIDASLYVAHNTSESDAYEDTGF 2686
Fly 2687 SNEEILWK-----------ACGKDDTRQLLAGYDTNKSILYTFVNI-----SREIYHC------- 2728
Fly 2729 -----KEQNLPGHKITLLPPLKINNMLCCDLMFKIHE---------HATGRINSSESVNIYNVNI 2779
Fly 2780 CQPLNLSITLDNFQLSGQLKIPVSHRGVIEPKLKLIDIQKRELHVRVSI---QSVPGKGMELYIS 2841
Fly 2842 APVWIINKTG--LPLIYKQEGTSHTAAGQFEEHETA-----RQVAPLMFSFSDQEGSPALVLRLG 2899
Fly 2900 KAYGSNNMWCKSFSTHKDLADRDLRAENTKGSYAIGISVRRGRGLYACTTFVTLSPRFHLHNRSG 2964
Fly 2965 YKLEFMQLCDIVNYDRPDPRKIISAPVDCNFAFHWPNWDQEQIICVRIPEIECCCWSKGIPIKDV 3029
Fly 3030 QSLYINVRNEWGEM-FFLRLEIISKDATFILLFTDARTLPPPIRIDNCSEVVINFSQLRSKPVWI 3093
Fly 3094 TPVRPQSSLSYVMDDPLGQQILLMEAPGGNMIEFPINNKNNIKKTLTYTNFIYIAFQGTFERSNE 3158
Fly 3159 EENTHRQLVLGVRGKKV---VIVEKNSGDRSQLWLMNSNGQLEH---------EGSTPPIQTNDA 3211
Fly 3212 NAVRLVLDLEKAPNPMEFTNLVVRTPNKQRVTTQTWRFENGRLMCHANMCVQSRFGESG---LKP 3273
Fly 3274 NYEAVVGRTENRASSSKQIPIGQHIVAQK-------------LRPGSGQLELSTKMDGPISTIEI 3325
Fly 3326 CDIKIKQ----NSVFLTPDLLWMHASLNNR-----QITDKGKVSFVHEYLINVELVKGIGISIIA 3381
Fly 3382 RKPCEEIMFISLDHINCDI---VQSALENSLDLNIAYIQIDNQLLDAVSPIALHTQTSNDLEETQ 3443
Fly 3444 NAVVLKLKMLPSPNKNAIIFKYLTLDLKPST--ASLEEKLILKVASFLGYGKINRQNLSVQYQFE 3506
Fly 3507 NTDDKPFLQDMKRYYFENLSIGATQVRLSAFTSSKLPVELHETKKALGLTLIKFEDALIELDRYS 3571
Fly 3572 DKLHFETMDVYRKELKKHYI-----NQVKWHAAAILGSVDFLGNPLGFANDLSEGVSGLIFEGSV 3631
Fly 3632 KSLVKNVTHGISNSTAKLTETLSDSLGKVVLDDHDNETR-QRILELQSNTSGGHLAAGLKGLGFG 3695
Fly 3696 LLGGVTSIVRHTYDGATSDGVPGFLSGLGKGLVGTVTKPIIGVLDLASET-----ASAVRETSRD 3755
Fly 3756 SHRNAPERKRLPRCVTGAPGGLLPLYSNRQSKGQQYLYLIN-QKNFSEKIISYEPNLWSDKEA-- 3817
Fly 3818 -------RLRLLVSTEYVRIFSLSDAN-----PT-IMFECHVSEILSCHPVVTNAGTTPTT---- 3865
Fly 3866 ---SSRASASHYIEISTNLPK 3883 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Vps13D | NP_729825.2 | Chorein_N | 4..112 | CDD:315323 | 32/114 (28%) |
VPS13 | 147..368 | CDD:318996 | 52/249 (21%) | ||
VPS13_mid_rpt | <656..837 | CDD:318998 | 46/246 (19%) | ||
VPS13 | <2039..>2694 | CDD:330393 | 135/902 (15%) | ||
SHR-BD | 2836..3113 | CDD:310922 | 48/284 (17%) | ||
VPS13 | <3346..3802 | CDD:330393 | 106/477 (22%) | ||
AT4G17140 | NP_001190747.1 | Chorein_N | 3..110 | CDD:289396 | 30/106 (28%) |
VPS13 | 136..375 | CDD:293513 | 52/250 (21%) | ||
VPS13_mid_rpt | 561..780 | CDD:293515 | 36/219 (16%) | ||
PH | 804..909 | CDD:278594 | 19/118 (16%) | ||
PH | 804..909 | CDD:214574 | 19/118 (16%) | ||
DUF946 | 2013..>2118 | CDD:283705 | 21/142 (15%) | ||
DUF946 | 2218..>2365 | CDD:283705 | 22/147 (15%) | ||
ATG_C | 3707..3785 | CDD:286423 | 20/77 (26%) | ||
DUF946 | 4026..>4178 | CDD:283705 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR16166 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 1 | 0.960 | - | - | ||
3 | 2.970 |