Sequence 1: | NP_729825.2 | Gene: | Vps13D / 39448 | FlyBaseID: | FBgn0052113 | Length: | 3919 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_796125.2 | Gene: | Vps13b / 666173 | MGIID: | 1916380 | Length: | 3993 | Species: | Mus musculus |
Alignment Length: | 4718 | Identity: | 848/4718 - (17%) |
---|---|---|---|
Similarity: | 1528/4718 - (32%) | Gaps: | 1696/4718 - (35%) |
- Green bases have known domain annotations that are detailed below.
Fly 1 MLRDLITWVLNTYLGKYLENLNSAQLSVALLSGEVELENIPIRKDAL-RSFNLPVEVTAGSIRKI 64
Fly 65 KLQIPVRQFRTSPWCISIEGLFCII------------CPKNLDNWDYEKEKLQDLEYKLAVLDTA 117
Fly 118 EAGWRSEKGKQMESYYFSSYNNWLKYGTNMATNIIDNIELKISDVHFRF--EDIVDTGKSKICTG 180
Fly 181 IKIGSLTAQSCDCDWTNGSYKMNNNEMNYKLVELKELSVYWDLLHEDI--------KCQSYSNQE 237
Fly 238 I-LEKMHSTCELRSHNFIIKPIC--ATARWKRDKCQQVIRTKDKPRVSCELLVPEVVIDISKVQR 299
Fly 300 LQMLDKLSEIRQVKEVRQYRLKRPTCTVESNPIAWWKYATICHGFDFKKNEEKWLMLKENLRYML 364
Fly 365 LYKSIILNPNENLSAADKEFKAYIESDRKISDLTIMRRICFEKVFTKGFAFESQNEQGKNMLFHW 429
Fly 430 FPNWMGW-YANSP---STPNNEQDE------SLKH------LEDDIL-----------------V 461
Fly 462 ALENSLQNSSDLKS-----------------------DAVFGHFSIK--LLKGLV-ILQTEDKLN 500
Fly 501 DGRNKSMEMQF---NNFSAYLQLSPQLTSYTVGISLQEVYLIDKTSSDTMHNYLIKPQTGNTATP 562
Fly 563 NQLVKNAALQEDILFQLQYENCNHLRFQLNIKSKGLDLIYNEDAIQWLLDFLADSNSFKYSPRNR 627
Fly 628 VAKKTDFMKNWNEMFSGNEVNRKIWMFEIEIFAPRIIFLENYKVSNSLMVLLDFGKLEMR--KME 690
Fly 691 VKRVIPVIESAVTENTSDDDETY--LTPCSTPPASEKSGSESPTLLENPKTESFLNKNVQLEYVL 753
Fly 754 HNKIYDKYLINFTNLQVLVCKYEERWQACLKTSSNFHLIDKFNINLTLEQRNIFTVDPEYPSFML 818
Fly 819 FGTCPTILIHGNEELINNCCNIMKPIIKASKEMENIYRGGNTIYASER----IKNLAEDDRSRVV 879
Fly 880 IEFVMDQLVIEMQSTERSI----------AELQIIGARAGLTKEPHE----------TNISMSVH 924
Fly 925 GLLL-------------------------VDAIQSFGPDFELLVASHRHVGMDSLSGSLKHSAIV 964
Fly 965 S--------------PTSPGSPNFFDRATSPHMITKAVQNIKMGDRSTEFCDDEDSTALISVDIK 1015
Fly 1016 IVPPNESNSMQLHTTSITFNSLDIIA------NQDTIIEILNFAKRTL-LAQNIFPSES--PES- 1070
Fly 1071 -PKEATEAPVDVVDQVDHKSHNEIFF----DFFRLNI-LLLYT------IKRDKFNVGRKVGTVT 1123
Fly 1124 LTEAKINASFQSDLSI----IGSLGGIQVID-----ITSEAFCHPRILSVGRDQILRASDTNKQT 1179
Fly 1180 VLSQLSNEIYSNNYNEETKSDESDAISFQS-HWSDKTTCTFQMRMASASYTHCPRFLRDVNACIT 1243
Fly 1244 YFK-------------------RSLREFATSI----------------GNKATDMAKEFVQQV-R 1272
Fly 1273 AVEQIGPVYPQRNRQDNW--------LDIIISSPI---IILPISNTSTNVLIANL-------GK- 1318
Fly 1319 --ISC------SNAVKCDSDEFNESYTIEIKNTYVYSLNIDEGEYS-FNVHPAKNKDAIP----- 1369
Fly 1370 --------------ILHDTAITLQ---LYAG----YSDDNDEDKQLNRFSIKGSMVEALKVSLNR 1413
Fly 1414 KQYELLLESIRYATNFSNEVLNESDELDQNGDIEP-TANIDAESIISTTIQFSVPVFQIN----- 1472
Fly 1473 --------------LQ---------------NEYHNDLINLTFKNF---NVKH------------ 1493
Fly 1494 -ISKGFDKDVEVVLKSVLMEDLKSDLT--SPFRNMVTSVDLEQKIKKNEMTSSSCPDLPSYCNSL 1555
Fly 1556 KNRSSSVPSCFYNHMQVKVFGGDQKYTSSN--KNELGKKKESQTLVIYKSHTGRSAQN--GKLEQ 1616
Fly 1617 TSSIQFNCLNLAI-------CVERWYTIFDFFGLVSVDNVNEKYPEEMKLVEKHIDKVCSKLKVS 1674
Fly 1675 IRSFNFTLIRN-ESLLSRVNVSNAVFMILQDPYSKIVEGCLGSVSVNDLTKYGNIYKQKFLTSGT 1738
Fly 1739 EALNFVYKKKLVDLEALNTLDTDSTLRINMSAVHYIHTKRFSTELHVFVKDLLQLQTPVIRKLKK 1803
Fly 1804 HGSEQNMRPSKMKLVIQADSPVIVLPSSYNRNEVIIAYLGQFSLKNSFHFASDNNIISKMSATPS 1868
Fly 1869 KDEILDVMRIDLVNINLFSGERSSMKAKADQEKDRIIIADMNFLRLGQPFFNESCFLHLQLERNL 1933
Fly 1934 SADAHRVCPDISVQGTFSKLS----GIINIQQYKLI---------RSFLNNNIGEQTDDIYMNYH 1985
Fly 1986 NNSCTSI----ERLSTINLMPKNEVSKIVSI-------------LISIRILLE---------DVS 2024
Fly 2025 LLLALNTSQSAAIEPLACIHFLKSTLEIDLFSDGSQDIDL--ISSNILIVDE-RNESDKSNENVF 2086
Fly 2087 -----------KNILEPSKKEVRIEN------SVQVEVHCRKKATFSKYTIMLNNMRVFALLSF- 2133
Fly 2134 -LDQLKSYLQ------------------------EDSPAP-----------VVNNAANQIAQKPQ 2162
Fly 2163 IDTSISTEYVVNITDSEIIFAEE--------C-----SRLDSNA--------------------- 2193
Fly 2194 --IILKSTTVICYKPNSNIV--PLSLDINHLEIFSCTLDAEEESALSIIDPFTLIIELRSNCLNI 2254
Fly 2255 LI-QKHLN-IRLSYVDVKLFS-------------RMARLLPTQTSRPKNVISKADSD-------- 2296
Fly 2297 -LEKAAPLVAMGFEISDCLYAMQINN------WRIND----AAIWLSQQKQNTYRNPALEMKTA- 2349
Fly 2350 ---------------------------------VVDASLISVFIIDDCMDADVPLLEVSLSKFLL 2381
Fly 2382 NFTFQTQDPNPKETNIRHYSLGN-IDTEVSVNYYNRRLSGWEPVAETW----------ESNLNWK 2435
Fly 2436 YTKGHLDNKKRFEIGISSKQMLK-----LNVTSTFIELFHMV---------LKNWTN-------- 2478
Fly 2479 -----DFNDNGAKNFRQRSPFIPFAL-----------QNLSGTPLLFKPIYAPLGDLTRSDLQQV 2527
Fly 2528 -------------ELIKNWYSVQPNETKTFDFSQKSK-----LRHVHSHQLN---------LHQI 2565
Fly 2566 FVQIHGWTLIG------PISVDKVGMFFRTTKLDSQFLTKSRIVFDISLIGSAQKLIKVKSSLGV 2624
Fly 2625 INKLDRNVFLKMTLKGTHSDGLSSISVIKPN-DELSVPLKFIDASLYVAHNTSESDAYEDTGFSN 2688
Fly 2689 E--EILWKACGKDD-TRQL-----LAGYDT-------NKSILYTFVNISREIYHCKEQNLPGHKI 2738
Fly 2739 TLLPPLKINNMLCCDLMFKIHEHATGRINSSESVNIYNVNICQPLNLSITLDNFQLSGQLKIPVS 2803
Fly 2804 HRGVIEPKLKLIDIQKRELHVRVSIQSVPGKGMELYISAPVWIINKTGLPLIYKQEGTSHTAAGQ 2868
Fly 2869 F-EEHETARQVAPLMFSFSDQEGSPALVLR--------------LGKAYGSNN----MWCKSFST 2914
Fly 2915 HKDLADRDLRAENTKGSYAIGISVRRGRGLYACTTFVTLSPRFHLHNRSGYKLEFMQLCDIVNYD 2979
Fly 2980 RPDPRKIISAPVDCNF--AF----HWPNWDQEQIICVRIPEIECCCWSKGIPIKDVQSLYINVRN 3038
Fly 3039 EW-----GEMFFLRLEIISKDATFILLFTDARTLPPPIR--------------IDNCSEVVINFS 3084
Fly 3085 QLRSKPVWI--TP----VRPQSSLS---------YVMDDPLGQQILLMEAPGGNMIEFPINNKNN 3134
Fly 3135 IKKTLTYTNFIYIAFQGTFERSNEEENT---HRQLVLG---VRGKKVVIVEKNSGDRSQLWLMNS 3193
Fly 3194 --NGQLEHEGSTPPIQTNDAN-----AVRLV---------LDLEKAPNPMEFTNLVVRTPNKQRV 3242
Fly 3243 TTQTWRFENGRLMCHANMCVQSRFGESGLK--PNYEAVVGRTENRASSSKQIPIGQHIVAQKLRP 3305
Fly 3306 GSGQLELSTKMDGPISTIEICDIKIKQNSVFLTPDLL------WMHASLNNRQITDKGKVSFVHE 3364
Fly 3365 YLINVELVKGIG-ISIIARKPCEEIMFISLDHINCDIVQSALENSLDLNIAYIQIDNQLLDAVSP 3428
Fly 3429 IALHTQTSNDLEETQNAVVLKLKMLPS-------P-----------------------NKNAIIF 3463
Fly 3464 KYLTL--------------DLKPSTASLEE-------KLILKVASFLGYGKINRQNLSVQYQFEN 3507
Fly 3508 TDDKPFLQDMKRYYFENL-SIGATQVRLSA-----FTSSK-LPVELHETKKALGLTLIKFEDALI 3565
Fly 3566 E-----------LDRYSDKLH-------FETMDVYR------KELKKHYINQVKWHAAAILGSVD 3606
Fly 3607 FLGNPLGFANDLSEGVSG---LIFEGSVK--------------SLVKNVTHGISNSTAKLTETLS 3654
Fly 3655 DSLGKVVLD-DHDN---ETRQRILELQSNTSGGHLAAGLKGLGFGLLGGVTSIV-------RHTY 3708
Fly 3709 DGATSDG--VPGFLSGLGKGLVGTVTKPIIGVLDLASETASAVRETSRDSHRNAPERKRLPRCVT 3771
Fly 3772 GAPGGLLPLYSNRQSKGQQYLYLINQKNFSEKIISYEPNLW----------------------SD 3814
Fly 3815 KEARLRLLVSTEYVRIFSLSDANPTIMFECHVSEILSC 3852 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Vps13D | NP_729825.2 | Chorein_N | 4..112 | CDD:315323 | 26/120 (22%) |
VPS13 | 147..368 | CDD:318996 | 37/233 (16%) | ||
VPS13_mid_rpt | <656..837 | CDD:318998 | 29/184 (16%) | ||
VPS13 | <2039..>2694 | CDD:330393 | 157/902 (17%) | ||
SHR-BD | 2836..3113 | CDD:310922 | 67/335 (20%) | ||
VPS13 | <3346..3802 | CDD:330393 | 129/568 (23%) | ||
Vps13b | NP_796125.2 | Chorein_N | 3..102 | CDD:315323 | 23/98 (23%) |
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 100..133 | 8/49 (16%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1262..1303 | 4/40 (10%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1616..1637 | 3/21 (14%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1735..1770 | 9/60 (15%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 2048..2067 | 0/18 (0%) | |||
SHR-BD | <2605..>2685 | CDD:310922 | 21/88 (24%) | ||
VPS13_C | 3557..3703 | CDD:318997 | 32/145 (22%) | ||
ATG_C | 3705..3809 | CDD:312735 | 37/131 (28%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R1642 |
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 1.030 |