Sequence 1: | NP_729825.2 | Gene: | Vps13D / 39448 | FlyBaseID: | FBgn0052113 | Length: | 3919 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_065872.1 | Gene: | VPS13C / 54832 | HGNCID: | 23594 | Length: | 3753 | Species: | Homo sapiens |
Alignment Length: | 4258 | Identity: | 832/4258 - (19%) |
---|---|---|---|
Similarity: | 1565/4258 - (36%) | Gaps: | 1105/4258 - (25%) |
- Green bases have known domain annotations that are detailed below.
Fly 1 MLRDLITWVLNTYLGKYLENLNSAQLSVALLSGEVELENIPIRKDALRSFNLPVEVTAGSIRKIK 65
Fly 66 LQIPVRQFRTSPWCISIEGLFCIICPKNLDNWDYEKEK--LQDLEYK------LAVLDTAEAGWR 122
Fly 123 S------------------EKGKQMESYYFSSYNNWLK------------YGTNMATNIIDNIEL 157
Fly 158 KISDVHFRFEDIVDTGKSKICTGIKIGSLTAQSCDCDWTNGSYKMNN-NEMNYKLVELKELSVYW 221
Fly 222 DLLHEDIKC-QSY--SNQEILEKMHSTCELRSHN------FIIKPICATAR-WKRDKCQQVIRTK 276
Fly 277 DKPRVSCELLVPEVVIDISKVQRLQMLDKLSEIRQVKEVRQYRLKRPTCTVESNPIAWWKYA--- 338
Fly 339 ----------TICHGFDFKKNEEKWLMLKENLRYMLLYKSIILNPNENLSAADKEFKAYIESDRK 393
Fly 394 ISD---LTIMRRICFEKVFTKGFAFESQNEQGKNMLFHWFPNWMGWYANSPSTPNNEQ------- 448
Fly 449 DESLKHLEDDIL---VALENSLQNSSDLKSDAVFGHFSIKLLKGLVILQTEDKLNDGRN--KSME 508
Fly 509 MQFNNFSAYLQLSPQLTSYTVGISLQEVYLIDKTSSDTMHNYLIKPQTGNTATPNQLVKNAALQE 573
Fly 574 DILFQLQYENCNHLRFQLN-----------IKSKGLDLIYNEDAIQWLLDFLADSNSFKYSP-RN 626
Fly 627 RVAKKTDFMKNWNEMFSGNEV-NRKIWMFEIEIFAPRIIFLE-NYKVSNSLMVLLDFGKLEMRKM 689
Fly 690 EVKRVIPVIESAVTENTSDDDETYLTPCSTPPASEKSGSESPTLLENPKTESFLNKNVQLEYVLH 754
Fly 755 NKIYDKYLINFTNLQVLVCKYEERWQAC-LKTSSNFHLIDKFNINLTLEQRNIFTVDPEYPSFML 818
Fly 819 FGTCPTILIHGNEELINNCCNIMKPIIKASKEMEN----------IYRGG-----------NTIY 862
Fly 863 A---------------------SERIKNLAE---DDRSRVVIEFVMDQLVIEMQSTERSIAELQI 903
Fly 904 IGARAGLTKEPHETNISMSVHGLLLVDAIQSFGPD-----FELLVASH-RHVGMD--SLSGSLKH 960
Fly 961 --SAIVSPTSPGSPNFFDRATSPHMITKAVQNIKMGDRSTEFCDDEDSTALISVDIKIVPPNESN 1023
Fly 1024 SMQLHTTSITFNSLDIIANQDTIIEILNFAKRTLLAQNIFPSE------------SPESPKEATE 1076
Fly 1077 APVDVVDQVDHKSHNEI--FFDFFRLNILLLYTIKRDKFNVGRKVGTVTLTEAKI-----NASFQ 1134
Fly 1135 S-DLSIIGSLGGIQVIDITSEAFCHPRILSVGRDQILRASDTNKQTVLSQLSNEIYSNNYNEETK 1198
Fly 1199 SDESDAISFQSHWSDKTTCTFQMRMASASYTHCPRFLRDVNACITYF---KRSLREFATSIGNKA 1260
Fly 1261 TDMAKEFVQQVRAVEQIGPVYPQRNRQDNWLDIIISSPIIILPISNTSTNVLIANLGKISCSN-- 1323
Fly 1324 AVKCDSDEFN----ESYTIEIKNTYVYSLNIDEGEYSFNVHPAKNKDAIPILHDTAITLQLYAGY 1384
Fly 1385 SDDNDEDKQLNRFSIKGSMVEALKVSLNRKQ----YELLLESIRYATNFSNEV---LNESDELDQ 1442
Fly 1443 NGDIEPTANI-DAESIISTTIQFSVPVFQINLQNEYHNDLINLTFKNFNVKHISKGFDKDVEVVL 1506
Fly 1507 KSVLMEDLKSDLTSPFRNM-VTSVDLEQKIKKNEMTSSSCPDLPSYCNSLKNRSSSVPSCFYNHM 1570
Fly 1571 QVKVFGGDQKYTSS--------NKNELGKKKESQTLVIYKSHTGRSAQ--NGKLEQTSSIQFNCL 1625
Fly 1626 NLAICVERWYTIFDFFGLV---SVDNVNEKYPE-----------EMKLVEKHI---DKVCSKLKV 1673
Fly 1674 SIRSFNFTLIRNESLLSRVNVSNAVFMILQDPYSKIVEGCLGSVSVNDLTKYGNIYKQKFLTSGT 1738
Fly 1739 EALNF---VYKKKLVDLEALNTLDTDSTLRINMSAVHYIHTKRFSTELHVFVKDLL----QLQTP 1796
Fly 1797 VIRKLKKHGSEQN---MRPSKMKLVIQADSPVIVLPSSYNRNEVIIAYLGQFSLKNSFHFASDNN 1858
Fly 1859 IISKMSATP----SKDEILDVMRIDLVNINLFSGERSSMKAKADQEKDRIIIADMNFLRLGQPFF 1919
Fly 1920 NESCFLHLQLERNLSADAHRVCPDISVQGTFSKLSGIINIQQYKLIRSFLNNNIGEQTDDIYMNY 1984
Fly 1985 HNNSCTSIERLSTINLMP------------KNEVSKIVSILISIRILLEDVSLLLALNT------ 2031
Fly 2032 ----SQSAAIEPLACIHFLKSTLEIDLFSDGSQDIDLISSNILIVDERNESDKSNENVFKNILEP 2092
Fly 2093 SKKEVRIENSVQVEVHCRKKATFSKYTIMLNNMRVFALLSFLDQLKSYLQEDSPAPVVNNAANQI 2157
Fly 2158 AQKPQI--------------DTSISTEYVVN--ITDSEIIFAEECSRLDSNAIILKSTTVICYKP 2206
Fly 2207 NSNIVPLSLDINHLEIFSCTLDAEE--ESALSIIDPFTLIIELRSNC--------LNILIQKHLN 2261
Fly 2262 IRLSYVDVK-LFSRMARLLPTQTSRPKNVISKADSDLEKAAPLVAMGFEISDCLYAMQINNW--- 2322
Fly 2323 RINDAAIWLSQQKQNTYRNPALEMKTAV--------VDASLI---------SVFIIDDC--MDAD 2368
Fly 2369 VPLLEVSLSKFLLNFTFQTQDPNPKETNIRHYS---LGNIDTEVSVNYYNRRLSGWEPVAETWES 2430
Fly 2431 NLNWKYTKGHLDNKK------------------RFEIGISSKQMLKLNVTSTFIELFHMVLKNWT 2477
Fly 2478 NDFNDNGAKNF----RQRSPFIPFALQNLSGTPLLFKP--IYAPLGDLTRSDLQQVELIKN---- 2532
Fly 2533 WYSVQPNETKTFDFSQKSKLRHVHSHQLNLHQIFVQIHGWTLIGPISVDKVGMFFRTTKLDSQFL 2597
Fly 2598 TKSRIV-FDISLIGSAQKLIKVKSSLGVIN---------KLDRNVFLKMTLKGTHSDGLSSISVI 2652
Fly 2653 KPNDELSVPLK------FIDASLYVAHNTSESDAYEDTGFSNEEILWK--ACGKDDTRQLLAGYD 2709
Fly 2710 TNKSILYTFVN-------ISREIYHCKEQNLPGHKITLLPPLKINNMLCCDLMF------KIHEH 2761
Fly 2762 ATGRINSSESVNIYNVNICQPLNLSITLDNFQ---LSGQLKI--------PVSHRGVIEPKLKLI 2815
Fly 2816 DIQKRELHVRVSIQSVPGKGMELYISAPVWIINKTGLPLIYKQEGTSHTAAGQFEEHETARQVAP 2880
Fly 2881 LMFSFSDQE--GSPALVLRLGKAYGSNNMWCKSFSTHKDLADRDLRAENTKGSYA---------- 2933
Fly 2934 --IGISVRRGRGLYACTTFVTLSPRFHLHNRSGYKLEFMQLCDIVNYDRPDPRKIISAPVDCNFA 2996
Fly 2997 FHWPNWDQEQI--ICVRIPEIECCCWSKGIPIKDVQSLYINVRNEWGEMFFLRLEIISKDATFIL 3059
Fly 3060 LFTDARTLPPPIRID-NCSE--VVINFSQLR--SKPVWITPVRPQSSLSYVMDDPLGQQILLMEA 3119
Fly 3120 PGGNMIEFPINNKNNIKKTLTYTNFIYIAFQGTFERSNEEENTHRQLVLGVRGKKVVIVEKNSGD 3184
Fly 3185 RSQLWLMNSN-GQLEHE------GSTPPIQTNDAN-AVRLVLDLEKAPNPMEFTNLVVRTPNKQR 3241
Fly 3242 VTTQTWRFENGRLMCHANMCVQSRFGESGLKPNYEAVVGR---TENRASSSKQIPIGQHIVAQKL 3303
Fly 3304 RPGSGQLELSTKMDGPISTIEICDIKIKQN-SVFLTPDLLWMHASLNNRQIT-DKGKVSFVHEYL 3366
Fly 3367 INVELVKGIGISIIARKPCEEIMFIS-------LDHINCDIVQSALENSLDLNIAYIQIDNQLLD 3424
Fly 3425 AVSPIALH--TQTSNDLEETQNAVVLKLKMLPSPNK--NAIIFKYLTLDLKPSTASLEEKLILKV 3485
Fly 3486 -ASFLG-----------------YGKINRQN---LSVQYQFENTDDKPFLQDMKRYYFENLSIGA 3529
Fly 3530 TQVRLS------AFTSSKLPVEL---HETK---KALGLTLIKFEDALIELDRYSDKLHFETMDVY 3582
Fly 3583 RKELKKHYINQ-VKWHAAAILGSVDFLGNPLGFANDLSEGVSGLIFEG----------------- 3629
Fly 3630 SVKSLVKNVTHGISNSTAKLTETLSDSLGKVVLDDHDNETRQRILELQSNTSGGHLAAGLKGLGF 3694
Fly 3695 GLLGGVTSIVRHTYDGATSDGVPGFLSGLGKGLVGTVTKPIIGVLDLASETASAVRETSRDSHRN 3759
Fly 3760 APERKRLPRCVTGAPGGLLPLYSNRQSKGQQYL 3792 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Vps13D | NP_729825.2 | Chorein_N | 4..112 | CDD:315323 | 38/115 (33%) |
VPS13 | 147..368 | CDD:318996 | 65/244 (27%) | ||
VPS13_mid_rpt | <656..837 | CDD:318998 | 31/182 (17%) | ||
VPS13 | <2039..>2694 | CDD:330393 | 147/750 (20%) | ||
SHR-BD | 2836..3113 | CDD:310922 | 66/297 (22%) | ||
VPS13 | <3346..3802 | CDD:330393 | 124/510 (24%) | ||
VPS13C | NP_065872.1 | Chorein_N | 4..113 | CDD:289396 | 37/108 (34%) |
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 150..176 | 2/25 (8%) | |||
VPS13 | 185..413 | CDD:293513 | 64/244 (26%) | ||
VPS13_mid_rpt | 613..833 | CDD:293515 | 41/269 (15%) | ||
MRS6 | 1046..>2612 | CDD:227376 | 344/1824 (19%) | ||
VPS13_mid_rpt | <1238..1368 | CDD:293515 | 34/156 (22%) | ||
VPS13_mid_rpt | 1690..1882 | CDD:293515 | 42/221 (19%) | ||
SHR-BD | 2764..3016 | CDD:284143 | 69/367 (19%) | ||
WWE | 3116..3181 | CDD:295449 | 13/75 (17%) | ||
VPS13_C | 3323..3500 | CDD:293514 | 44/182 (24%) | ||
ATG_C | 3507..3582 | CDD:286423 | 32/74 (43%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D4159at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R1642 |
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
User_Submission | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.950 |