Sequence 1: | NP_729825.2 | Gene: | Vps13D / 39448 | FlyBaseID: | FBgn0052113 | Length: | 3919 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_005167391.1 | Gene: | vps13a / 378837 | ZFINID: | ZDB-GENE-030926-1 | Length: | 3236 | Species: | Danio rerio |
Alignment Length: | 4288 | Identity: | 778/4288 - (18%) |
---|---|---|---|
Similarity: | 1440/4288 - (33%) | Gaps: | 1455/4288 - (33%) |
- Green bases have known domain annotations that are detailed below.
Fly 1 MLRDLITWVLNTYLGKYLENLNSAQLSVALLSGEVELENIPIRKDALRSFNLPVEVTAGSIRKIK 65
Fly 66 LQIPVRQFRTSPWCISIEGLFCIICPKNLDNWDYEKEKLQDLEYKLAVLDTAE------AGWRSE 124
Fly 125 KGKQMESYYFSSYNNWLKYGTNMATNIIDNIELKISDVHFRFEDIVDTGKSKICTGIKIGSLTAQ 189
Fly 190 SCDCDWTNGSYKMNNNEMNYKLVELKELSVYWDLLHEDIKCQSYSN---QEILEKM-HS----TC 246
Fly 247 ELRSHNFIIKPICATARWKRDKCQQVIRTKDKPRVSCELLVPEVVIDISKVQRLQMLDKLSEIRQ 311
Fly 312 VKEVRQYRLKRPTCTVESNPIAWWKYATICHGFDFKKNEE------KWLMLKENLRYMLLYKSII 370
Fly 371 LNPNENLSAADKEFKAYIESDRKISDLTI-MRRICFE--------KVFTKGFAFESQNEQGKNML 426
Fly 427 FHWFPNWMGWYANSPSTPNNEQDESLKHLEDDILVALENSLQNSSDLKSDAVFGHFS----IKLL 487
Fly 488 KGLVILQTEDKLNDGRN-KSMEMQFNNFSAYLQLSPQLTSYTVGISLQEVYLID----KTSSDTM 547
Fly 548 HNYLIKPQTGN---TATPNQLVKNA----------ALQEDILFQLQYENCNHLRF----QLNIKS 595
Fly 596 KGLDLIYNEDAIQWL-----------LDFLADSNSFKYSP-RNRVAKKTDFMKNWNEMFSGNEVN 648
Fly 649 RKIWMFEIEIFAPRIIFLEN--YKVSNSLMVLLDFGKLEMRKMEVKRVIPVIESAVTENTSDDDE 711
Fly 712 TYLTPCSTPPASEKSGSESPTLLENPKTESFLNKNVQLEYVLHNKIYDKYLINFTNLQVLVCKYE 776
Fly 777 ERWQAC--LKTSSNFHLIDKFNINLTLEQRNIFTVDPEYPSFMLFGTCPTILIHGNEELINNCCN 839
Fly 840 IMKPIIKASKEMENIYRGGNTIYASERIKNLAEDDRSRVVIEFVMDQLVIEMQSTERSIAELQII 904
Fly 905 GARAGLTKEPHETNISMSVHGLLLVDAIQSFGPDFELLVASHRHVGMDSLSGSLKHSAIVSPTSP 969
Fly 970 GSPN--FFDRATSPHMITKAVQNIKMGDRSTEFCDDEDSTALISVDIKIVPPNESNSMQLHTTSI 1032
Fly 1033 TFNSLDIIANQDTIIEILNFAKRTLLAQNIFPSESPESPKEATEAPVDVVDQVDHKSHNEIFFDF 1097
Fly 1098 FRLNILLLYTIKRDKFNVGRKVGTVTLTEAKINASFQSDLSIIGSLGGIQVIDITSEAFCHPRIL 1162
Fly 1163 SVGRDQILRASDTNKQTVLSQLSNEIYSNNYNEETKSDESDAISFQSHWSDKTTCTFQMRMASAS 1227
Fly 1228 YTHCPRFLRDVNACITYFKRSLREFATSIGNKATDMAKEFVQQVRAVEQIGPVYPQRNRQDNWLD 1292
Fly 1293 IIISSPIIILPISNTSTNVLIANLGKISCSNAVKCDSD--EFNESYTIEIKNT-YVYSLNIDEGE 1354
Fly 1355 YSFNVHPAKNKDAIPILHDTAITLQLYAGYSDDNDEDKQLNRFSIKGSMVEALKVSLNRKQYELL 1419
Fly 1420 LESIRYATNFSNEVLNESDELDQNGDIEPTANIDAESIISTTIQFSVPVFQINLQNEYHNDLINL 1484
Fly 1485 TFKNFNVKHISKGFDKDVEVVLKSVLMEDLKSDLTSPFRNMVTSVDLEQKIKKNEMTSSSCPDLP 1549
Fly 1550 SYCNSLKNRSSSVPSCFYNHMQVKVFGGDQKYTSSNKNELGKKKESQTLVIYKSHTGRSAQNGKL 1614
Fly 1615 EQTSSIQFNCLNLAICVERWYTIFDFFGLVSVDNVNEKYPEEMKLVEKHIDKVCSKLKVSIRSFN 1679
Fly 1680 FTLIRNESLLSRVNVSNAVFMILQDPYSKIVEGCLGSVSVNDLTKYGNIYKQKFLTSGTEALNFV 1744
Fly 1745 YKKKLVDLEALNTLD------------TDSTLRINMSAVHYIHTKRFSTELHVFVKD-------L 1790
Fly 1791 LQLQTPVIRKLKKHGSEQNMRPSKMKLVIQADSPVIVLPSSYNRNEVIIAYLGQFSLKNSFHFAS 1855
Fly 1856 DNNIISKMSATPSK-DEILDVMRIDLVNINLFSGERSSMKAKADQEKDRIIIADMNF---LRLGQ 1916
Fly 1917 PFFNESCFLHLQLERNLSADAHRVCPDISVQGTFSKLSGIINIQQYKLIRSFLNNNIGEQTD--- 1978
Fly 1979 --------DIYMNYHNNSCTSIERLSTINLMPKNEVSKIVSILISIRILLEDVSLLLALNTSQ-- 2033
Fly 2034 --SAAIEPLACIHFLKSTL--EIDLFSDGSQDIDLISSNILIVDERNESDKSNENVFKNILEPSK 2094
Fly 2095 KEVRIENSVQVEVHCRKKATFSKYTIMLNNMRVFALLSFL----DQLKSYLQEDSPAPVVNNAAN 2155
Fly 2156 QIAQK----PQIDTSISTEYVVNITDSEIIFAEECSRLDSNAIILKSTTVICYKPNSNIVPLSLD 2216
Fly 2217 INHLEIFSCTL--DAEEESALSIIDPFTLIIELRSN-----CLNILIQKHLNIRLSYVDVKLFSR 2274
Fly 2275 MARLLPTQTSRPKNVISKADSDLEKAAPLVAMGFEISDCLYAMQINNWR---INDAAIWLSQQKQ 2336
Fly 2337 NTYRNPALEMKTAVV----DASLISVFIIDDCMDADVPLLEVSLSKFLLNFTFQTQDPNPKETNI 2397
Fly 2398 RHYS-LGNIDTEVS--VNYYNRRLSGWEPVAE-----------TWESNLNWK----YTKGHLDN- 2443
Fly 2444 -----KKRFEIGISSKQMLKLNVTSTFIELFHMVLKNWTNDFNDNGAKNFRQ--RSPFIPFALQN 2501
Fly 2502 LSG--TPLLFKPIYAPLGDLTRSDLQQVELIKNWYSVQPNETKTFDFSQKSKLRHVHSHQLNLH- 2563
Fly 2564 QIFVQIH--GWTLIGPISVDKVGMFFRTTKLDSQFLTKSRIVFDISLIGSAQKLIKVKSSLGVIN 2626
Fly 2627 KL-------DRNVFLKMTLKGTHSDGLSSISVIKPNDELSVPLKFIDASLYVAHNTSESDAYEDT 2684
Fly 2685 -GFSNEEILWKACGKDDTRQLLAGYDTNKSILYTFVNISREI-YHCKEQNLPGHKIT-LLPPLKI 2746
Fly 2747 NNMLCCDLMFKIHEHATGRINSSESVNIYNVNICQ---------PLNLSITLDNFQLSGQLKIPV 2802
Fly 2803 SHRGVIEPKLKLIDIQ----------KRELHVRVSIQSVPGKGMELYISAPVWIINKTGLPLIYK 2857
Fly 2858 QEGTSHTAAGQFEEHETARQVAPLMFSFSDQEGSPALVLRLGKAYGSNNMWCKSFSTHKDLAD-- 2920
Fly 2921 --------RDLRAENTKGSYAIGISVRRGRGLYACTTFVTLSPRFHLHNRSGYKLEFMQLCDIVN 2977
Fly 2978 YDRPDPRKIISAPVDCNFAFHWPNWDQEQIICVRIPEIECCCWSKGIPIKDVQSLYINVRNEWGE 3042
Fly 3043 MFFLRLEIISKDATFILLFTDARTLPPPIRIDNCSEVVINFSQLRSKPVWITPVRPQSSLSYVMD 3107
Fly 3108 DPLGQQILLMEAPGGNMIEFPINNKNNIKKTLTYTNFIYIAFQGTFERSNEEENTHRQLVLGVRG 3172
Fly 3173 KKVVIVEKNSGDRSQLWLMNSNGQLEHEGSTP----------PIQTNDANAVRL--------VLD 3219
Fly 3220 LEKAPNPMEFTNLVVRTPNKQRVTTQTWRFENGRLMCHANMCVQSRFGESGLKPNYEAVVGRTEN 3284
Fly 3285 RASSSKQIPIGQHIVAQKLRPGSGQLE------LSTKMDGPISTIEICDIKIKQNSVFLTPDLLW 3343
Fly 3344 MHASLNNRQITDKGKVSFVHEYLINVELVKGIGISIIARKPCEEIMFISL--------------- 3393
Fly 3394 ------------------DHINCDIVQSAL------------ENSLDLNIAY------------- 3415
Fly 3416 --------------------IQIDNQLLDAVSPIALH-----TQTSNDLEETQNAVVLKLKMLPS 3455
Fly 3456 PNKNAIIFKY---------LTLDL---------------KPSTASLEEKLILKVASFLGYGKINR 3496
Fly 3497 QNLSVQYQFENTDDKPF-------LQDMKRYYFENLSIGATQVRLSAFTSSKLPVE-LHETKKAL 3553
Fly 3554 GLTLIKFEDALIELDRYSDKLHFETMDVYRKELKKHYINQ-VKWHAAAILGSVDFLGNPLGFAND 3617
Fly 3618 LSEGVSGLIFEG-----------------SVKSLVKNVTHGISNSTAKLTETLSDSLGKVVLDDH 3665
Fly 3666 DNETRQRILELQSNTSGGHLAAGLKGLGFGLLGGVTSIVRHTYDGATSDGVPGFLSGLGKGLVGT 3730
Fly 3731 VTKPIIGVLDLASETASAVR---ETSRDSHRNAPERKRLPRCVTGAPGGLLPLYSNRQSKGQQYL 3792
Fly 3793 YLINQKNFSEKIISYEPNLWSDKEARLRLLVSTEYVRIFSLSDANPTIMFECHVSEILSCHPVVT 3857
Fly 3858 NAG---TTPTTSSRASA--SHYIEISTNLPKITRPRIRCRSEECAEAASRCINYAKSVFDERE 3915 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Vps13D | NP_729825.2 | Chorein_N | 4..112 | CDD:315323 | 35/107 (33%) |
VPS13 | 147..368 | CDD:318996 | 62/234 (26%) | ||
VPS13_mid_rpt | <656..837 | CDD:318998 | 35/184 (19%) | ||
VPS13 | <2039..>2694 | CDD:330393 | 140/717 (20%) | ||
SHR-BD | 2836..3113 | CDD:310922 | 45/286 (16%) | ||
VPS13 | <3346..3802 | CDD:330393 | 135/591 (23%) | ||
vps13a | XP_005167391.1 | MRS6 | 4..>2027 | CDD:227376 | 499/2791 (18%) |
Chorein_N | 4..113 | CDD:289396 | 35/108 (32%) | ||
VPS13 | 142..370 | CDD:293513 | 62/238 (26%) | ||
VPS13_mid_rpt | 575..798 | CDD:293515 | 53/303 (17%) | ||
VPS13_mid_rpt | 1174..>1351 | CDD:293515 | 43/205 (21%) | ||
SHR-BD | 2242..2514 | CDD:284143 | 68/484 (14%) | ||
VPS13_C | 2828..3005 | CDD:293514 | 43/177 (24%) | ||
ATG_C | 3008..3087 | CDD:286423 | 30/78 (38%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D4159at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R1642 |
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
ZFIN | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.950 |