Sequence 1: | NP_729825.2 | Gene: | Vps13D / 39448 | FlyBaseID: | FBgn0052113 | Length: | 3919 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_796158.2 | Gene: | Vps13c / 320528 | MGIID: | 2444207 | Length: | 3748 | Species: | Mus musculus |
Alignment Length: | 4291 | Identity: | 867/4291 - (20%) |
---|---|---|---|
Similarity: | 1630/4291 - (37%) | Gaps: | 1013/4291 - (23%) |
- Green bases have known domain annotations that are detailed below.
Fly 1 MLRDLITWVLNTYLGKYLENLNSAQLSVALLSGEVELENIPIRKDALRSFNLPVEVTAGSIRKIK 65
Fly 66 LQIPVRQFRTSPWCISIEGLFCIICPKNLDNWDYEKEK--LQDLEYK------LAVLDTAEAGWR 122
Fly 123 S------------------EKGKQMESYYFSSYNNW---------LKYGT---NMATNIIDNIEL 157
Fly 158 KISDVHFRFEDIVDTGKSKICTGIKIGSLTAQSCDCDWTNGSYKMNNNE-MNYKLVELKELSVYW 221
Fly 222 DLLHEDIKCQSY--SNQEILEKMH-----STCELRSHNFIIKPICATAR-WKRDKCQQVIRTKDK 278
Fly 279 PRVSCELLVPEVVIDISKVQRLQMLDKLSEIRQVKEVRQYRLKRPTCTVESNPIAWWKYATICHG 343
Fly 344 FD------FKKNEEKW---------LMLKENLRYMLLYKSIILNPNENLSAADKEFKAYIESDRK 393
Fly 394 ---ISDLTIMRRICFEKVFTKGFAFESQN-EQGKNMLFHWFPNWMGWYANSPSTPNNEQDESLKH 454
Fly 455 LEDDILVALENS--------LQNSSDLKSDAVF-GH-FSIKLLKGLVILQTEDKLNDGRN--KSM 507
Fly 508 EMQFNNFSAYLQLSPQLTSYTVGISLQEVYLIDKTSSDTMHNYLIKPQTGNTATPNQLVKNAALQ 572
Fly 573 EDILFQLQYENCNHLRFQLNIKSKGLDLIYNEDAIQWLLDFLADSNSFKYSP-RNRVAKKTDFMK 636
Fly 637 NWNEMFSGNEV-NRKIWMFEIEIFAPRIIFLE---NYKVSNSLMVLLDFGKLEMRKMEVKRVIPV 697
Fly 698 IESAVTENTSDDDETYLTPCSTPPASEKSGSESPTLLENPKTESFLNKNVQLEYVLHNKIYDKYL 762
Fly 763 INFTNLQVLVCKYEERWQAC-LKTSSNFHLIDKFNINLTLEQRNIFTVDPEYPSFMLFGTCPTIL 826
Fly 827 IHGNEELINNCCNIMK--------------------PIIKA----------------SKEMENIY 855
Fly 856 -------RGGNTIYASERIKNLAE---DDRSRVVIEFVMDQLVIEMQSTERSIAELQIIGARAGL 910
Fly 911 TKEPHETNISMSVHGLLLVDAIQSFGPD-----FELLVASH-RHVGMD--SLSGSLKHSAIVSPT 967
Fly 968 SPGSPNFFDRATSPHMITKAVQNIKMGDRSTEFCDDEDSTALISVDIKIVPPNESNSMQLHTTSI 1032
Fly 1033 TFNSLDIIANQDTIIEILNFAKRTLLAQNIFPSESPES---------PKEATEAPVDVVDQVDHK 1088
Fly 1089 SHNEIFFDFF-RLNILLLYTIKRDKFNVGRKVGTVTLTEAKI-----NASFQS-DLSIIGSLGGI 1146
Fly 1147 QVIDITSEAFCHPRILSVGRDQILRASDTNKQTVLSQLSNEIYSNN---YNEETKSDESDAISFQ 1208
Fly 1209 SHWSDKTTC--TFQMRMASASYTHCPRFLRDVNACITYF---KRSLREFATSIGNKATDMAKEFV 1268
Fly 1269 QQVRAVEQIGPVYPQRNRQDNWLDIIISSPIIILPISNTSTNVLIANLGKISCSNAVKCDSDEFN 1333
Fly 1334 ESYTIEIKNTYVYSLNIDEGEYSFN--------VHPAKNKDAIPILHDTAITLQLYAGYSDDNDE 1390
Fly 1391 DKQLNRFSIKGSMVEALKVSLNRKQYELLLESIRYATNFSNEVLNE-SDELDQNGDIEPTANIDA 1454
Fly 1455 ESIISTTIQFSVPVFQINLQNEYHNDLINLTFKNFNVKHISKGFDKDVEVVLKSVLMEDLKSDLT 1519
Fly 1520 SPFRNM-VTSVDLEQKIKKNEMTSSSCPDLPSYCNSLKNRSSSVPSCFYNHMQVKVFGGDQKYTS 1583
Fly 1584 SNKNELGKKKESQTLVIYKSHTGRSAQ--NGKLEQTSSIQFNCLNLAICVERWYTIFDFFGLV-- 1644
Fly 1645 -SVDNVNEKYPEEMKLVEKH----IDKVCS---------KLKVSIRSFNFTLIRNESLLSRVNVS 1695
Fly 1696 NAVFMILQDPYSKIVEGCLGSVSVNDLTKYGNIYKQKFLTSGTEALNFVYKKKLVDLEALNTLD- 1759
Fly 1760 --TDSTLRINMSAVHYIHTKRFSTELHVFVKDLL----QLQTPVIRKLKKHGSE-QNMRPSKMKL 1817
Fly 1818 VIQAD--SPVIVLPSSYNRNEVIIAYLGQFSLKNSFHFASDNNIISKMSATPSKDEILDVMRIDL 1880
Fly 1881 VNINLFSGERSSMKAKADQEKDRIIIADMNFLRLGQPFFNESCFLHLQLERNLSADAHRVCPDIS 1945
Fly 1946 VQGTFSKLSGIINIQQYKLIRSFLNNNIGEQTDDIYMNYHNNSCTSIER--------LSTINLM- 2001
Fly 2002 PKNEVSKIVSILISIRILLEDVSLLLALNTSQSAAIEPLACIH---FLKSTLEIDL-------FS 2056
Fly 2057 DGSQDIDLISSNILIVDERNESDKSNENVFKNILEPSKKEVRIENSVQVEVHCRKKATFSKYTIM 2121
Fly 2122 LNNMRVFALLSFLDQLKSYLQEDSP-----------APVVNNAANQIAQKPQIDTSISTEYVVN- 2174
Fly 2175 -ITDSEIIFAEECSRLDSNAIILKSTTVICYKPNSNIVPLSLDINHLEIFSCTLDAEE--ESALS 2236
Fly 2237 IIDPFTLIIELRSNC--------LNILIQKHLNIRLSYVDVK-LFSRMARLLPTQTSRPKNVISK 2292
Fly 2293 ADSDLEKAAPLVAMGFEISDCLYAMQ----INNWRIN-DAAIWLSQQKQNTYRNPALEMKTAVVD 2352
Fly 2353 ASLISVFIIDDCMDADVPLLEVSLSKFLLNFTFQTQDPNPKETNIRHYS---LGNIDTEVSVNYY 2414
Fly 2415 NRRLSGWEPVAETWESNLNW----KYTKGHLDNKK-----------RFEIGISSKQMLKLNVTST 2464
Fly 2465 FIELFHMVLKNWTNDFNDNGAKNF----RQRSPFIPFALQNLSGTPLLFKP--IYAPLGDLTRSD 2523
Fly 2524 L------QQVELIKNWYSVQPNETKTFDFSQKSKLRHVHSHQLNLHQIFVQIHGWTLIGPISVDK 2582
Fly 2583 VGMFFRTTKLDSQFLTKSRIV-FDISLIGSAQKLIKVKSSLGVIN---------KLDRNVFLKMT 2637
Fly 2638 LKGTHSDGLSSISVIKPNDELSVPLKFIDASLYV--AHNTSESDAYEDTGFSNEEILWKACGKDD 2700
Fly 2701 TRQLLAGYDTNKSILYTFVN-------ISREIYHCKEQNLPGHKITLLPPLKINNMLCCDLMF-- 2756
Fly 2757 ----KIHEHATG--------RINSSESVNIYNV-----------NICQPLNLSITLDNFQL---S 2795
Fly 2796 GQLKIPVSHRGVIEPKLKLIDIQKRELHVRVSIQSVPGKGMELYISAPVWIINKTGLPLIYKQEG 2860
Fly 2861 TSHTAAGQFEEHETARQVAPLMFSFSDQE--GSPALVLRLGKAYGSNNMWCKSFSTHKDLADRDL 2923
Fly 2924 RAENTKGSYAIGISVRRGRGLYACTTFVTLSPRFHLHNRSGYKLEFMQLCDIVNYDRPDPRKIIS 2988
Fly 2989 APVDCNFAFHWPNWDQEQI---ICVRIPEIECCCWSKGIPIKDVQSLYINVRNEWGEMFFLR--- 3047
Fly 3048 ----LEIISKDATFILLFTDARTLPPPIRIDNCSEVVINFSQLRSKPVWITPVRPQSSLSYVMDD 3108
Fly 3109 PLGQQILLMEAPGGNMIEFPINNKNNIKKTLTYTNFIYIAFQGTFERSNEEENTHRQLVLGVRGK 3173
Fly 3174 KVVIVEKNSGDRSQLWLMNSNGQLEHEGSTPPIQTNDAN-AVRLVLDLEKAPNPMEFTNLVVRTP 3237
Fly 3238 NKQRVTTQTWRFENGRLMCHANMCVQSRFGESGLKPNYEAVVGR---TENRASSSKQIPIGQHIV 3299
Fly 3300 AQKLRPGSGQLELSTKMDGPISTIEICDIKIKQN-SVFLTPDLLWMHASLNNRQIT-DKGKVSFV 3362
Fly 3363 HEYLINVELVKGIGISIIARKPCEEIMFISLDHINCDIVQSALENSLDLNIAYIQIDNQLLDAVS 3427
Fly 3428 PIALH--TQTSNDLEETQNAVVLKLKMLPSPNK--NAIIFKYLTLDLKPSTASLEEKLILKV-AS 3487
Fly 3488 FLG-----------------YGKINRQN---LSVQYQFENTDDKPFLQDMKRYYFENLSIGATQV 3532
Fly 3533 RLSAFTSS---------KLPVELHETK---KALGLTLIKFEDALIELDRYSDKLHFETMDVYRKE 3585
Fly 3586 LKKHYINQ-VKWHAAAILGSVDFLGNPLGFANDLSEGVSGLIFEG-----------------SVK 3632
Fly 3633 SLVKNVTHGISNSTAKLTETLSDSLGKVVLDDHDNETRQRILELQSNTSGGHLAAGLKGLGFGLL 3697
Fly 3698 GGVTSIVRHTYDGATSDGVPGFLSGLGKGLVGTVTKPIIGVLDLASETASAVRETSRDSHRNAPE 3762
Fly 3763 RKRLPRCVTGAPGGLLPLYSNRQSKGQQYLYLINQKNFSEKI----ISYEPNLWSDKEARL---- 3819
Fly 3820 RLLVSTEYVRIFSLSDANPTIMFECHVSEILSCHPVVTNAGTTPTTSSRASASHYIEISTNLPKI 3884
Fly 3885 T 3885 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Vps13D | NP_729825.2 | Chorein_N | 4..112 | CDD:315323 | 39/115 (34%) |
VPS13 | 147..368 | CDD:318996 | 64/244 (26%) | ||
VPS13_mid_rpt | <656..837 | CDD:318998 | 35/184 (19%) | ||
VPS13 | <2039..>2694 | CDD:330393 | 149/735 (20%) | ||
SHR-BD | 2836..3113 | CDD:310922 | 58/288 (20%) | ||
VPS13 | <3346..3802 | CDD:330393 | 122/511 (24%) | ||
Vps13c | NP_796158.2 | Chorein_N | 4..113 | CDD:289396 | 38/108 (35%) |
VPS13 | 185..414 | CDD:293513 | 64/245 (26%) | ||
VPS13_mid_rpt | 612..832 | CDD:293515 | 47/272 (17%) | ||
VPS13_mid_rpt | <1236..1366 | CDD:293515 | 36/158 (23%) | ||
MRS6 | <1237..>2607 | CDD:227376 | 309/1542 (20%) | ||
VPS13_mid_rpt | 1687..1879 | CDD:293515 | 45/217 (21%) | ||
SHR-BD | 2759..3013 | CDD:284143 | 63/311 (20%) | ||
WWE | 3111..>3161 | CDD:295449 | 9/49 (18%) | ||
VPS13_C | 3318..3495 | CDD:293514 | 43/182 (24%) | ||
ATG_C | 3503..3577 | CDD:286423 | 32/73 (44%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D4159at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R1642 |
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.950 |