Sequence 1: | NP_729825.2 | Gene: | Vps13D / 39448 | FlyBaseID: | FBgn0052113 | Length: | 3919 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_766616.2 | Gene: | Vps13a / 271564 | MGIID: | 2444304 | Length: | 3166 | Species: | Mus musculus |
Alignment Length: | 4166 | Identity: | 758/4166 - (18%) |
---|---|---|---|
Similarity: | 1388/4166 - (33%) | Gaps: | 1467/4166 - (35%) |
- Green bases have known domain annotations that are detailed below.
Fly 1 MLRDLITWVLNTYLGKYLENLNSAQLSVALLSGEVELENIPIRKDALRSFNLPVEVTAGSIRKIK 65
Fly 66 LQIPVRQFRTSPWCISIEGLFCIICPKNLDNWDYEKEKLQDLEYKLAVLDTAEAG----WRSEKG 126
Fly 127 KQMESYYFSSYNNWLKYGTNMATNIIDNIELKISDVHFRFEDIVDTGKSKICTGIKIGSLTAQSC 191
Fly 192 DCDWTNGSYKMNNNEMNYKLVELKELSVYWDLLHEDIKCQSYS-----------NQEILEKMHST 245
Fly 246 CELRSHNFIIKPICATARWKRDKCQQVIRTKD----KPRVSCELLVPEVVIDISKVQRLQMLDKL 306
Fly 307 SEIRQVKEVRQYRLKRPTCTVESNPIAWWKYA-------TIC-------------HGFDFKKNEE 351
Fly 352 KWLMLKENLRYMLLYKSIILN--PNENLSAADKEFKAYIESDRKISDLTIMR-------RICFEK 407
Fly 408 VFTKGFAFESQNEQGKNMLFHWFPNWMGW-YANSPSTPNNEQDESLKHLEDDILVALENSLQ--- 468
Fly 469 -NSSDLKSDAVFGHFSIKLLKGLVILQTEDKLNDGRNKSMEMQFNNFSAYLQLSPQLTSYTV-GI 531
Fly 532 SLQEVY------LIDKTSSDTMHNYLIKPQTGNTATPNQLVKN---AALQEDILFQLQYENCNHL 587
Fly 588 R----FQLNIKSKGLDLIYNEDAIQWLLDFLADSNSFKYSPRNRVAKKTDFMKNWNEMFSGNEVN 648
Fly 649 RKIWMFE--------IEIFAPRIIFLE--NYKVSNSLMVLLDFGKLEMRKMEVKRVIPVIESAVT 703
Fly 704 ENTSDDDETYLTPCSTPPASEKSGSESPTLLENPKTESFLNKNVQLEYVLHNKIYDKYLINFTNL 768
Fly 769 QVLVCKYEERWQACLKTS-SNFHLIDKFNINLTLEQRNIFTVDPEYPSFMLFGTCPTILIHGNEE 832
Fly 833 LINNCCNIMKPIIKASKEMENIYRGGNTIYASERIKNLAEDDRSRVVIEFVMDQLVIEMQSTERS 897
Fly 898 IAELQIIGARAGLTKEPHETNISMSVHGLLLVDAIQSFGPDFELLVASHRHVGMDSLSGSLKHSA 962
Fly 963 IVSPTSPGSPNFFDRATSPHMITKAVQNIKMGDRSTEFCDDEDSTALISVDIKIVPPNESNSMQL 1027
Fly 1028 HTTSITFNSLDIIANQDTIIEILNFAKRTLLAQNIFPSESPESPKEATEAPVDVVDQVDHKSHNE 1092
Fly 1093 IFFDFFRLNILLLYTIKRDKFNVGRKVGTVTLTEAKINASFQSDLSIIGSLGGIQVIDITSEAFC 1157
Fly 1158 HPRILSVGRDQILRASDTNKQTVLSQLSNEIYSNNYNEETKSDESDAISFQSHWSDKTTCTFQMR 1222
Fly 1223 MASASYTHCPRFLRDVNACITYFKRSLREFATSIGNKATDMAKEFVQQVRAVEQIGPVYPQRNRQ 1287
Fly 1288 DNWLDIIISSPIIILPISNTSTNVLIANLGKISCSNAVKCDSDEFNESYTIEIKNTYVYSLNIDE 1352
Fly 1353 GEYSFNVHPAKNKDAIPILHDTAITLQLYAGYSDDNDEDKQLNRFSIKGSMVEALKVSLNRKQYE 1417
Fly 1418 LLLESIRYATNFSNEVLNE---------SDELDQNGDI-------EPTANIDAESIISTTIQFSV 1466
Fly 1467 PVFQINLQNEYHNDLINLTFKNFNVKHIS-KGFDKDVEVVLKSVLMEDLKSDLTSPFRNMVTSVD 1530
Fly 1531 LEQKIKKNEMTSSSCPDLPSYCNSLKNRSSSVPSCFYNHMQVKVFGGDQKYTSSNKNELGKKKES 1595
Fly 1596 QTLVIYKSH---TGRSAQNGKLEQTSSIQFNCLNLAICVERWYTIFDFFGLVSVDNVNEKYP-EE 1656
Fly 1657 MKLVEKHIDKVCSKLKVSIRSFNFTLIRNESLLSRVNVSNAVFMILQDPYSKIVEGCLGSVSVND 1721
Fly 1722 LTKYGNIYKQKFLTSGTEALNFVYKKKLVDLEALNTLDTDSTLRINMSAVHYIHTKRFSTELHVF 1786
Fly 1787 VKDLLQLQTPVIRKLKKHG-SEQNMRPSKMKLVIQADSPVIVLPSSYNRNEVIIAYLGQFSLKNS 1850
Fly 1851 FHFASDNNIISKMSATPSKDEI---LDVMRIDLVNINLFSGERSSMKAKADQEKDRIIIADMNFL 1912
Fly 1913 RLGQPFFNESCFLHLQLERNLSADAHRVCPDISVQGTFSKLSGIINIQQYKLIRSFLNNNIGEQT 1977
Fly 1978 DDIYMNYHNNSCTSIERLSTINLMPKNEVSKIVSILISIRILLEDVSLLLALNTS------QSAA 2036
Fly 2037 IEPLACIHFLKSTLEIDLFSDGSQDI------------------DLISS---------------- 2067
Fly 2068 NILIVDERNESDKSNENVFKNILEPSKKEVRIENSVQVEVHCRKKATFSKYTIMLNNMRVFALLS 2132
Fly 2133 FLDQLKSYLQEDSPAPVVNNAANQIAQKPQIDTSIST--------------EYVVNITDSEIIFA 2183
Fly 2184 EECSRLDSNAIILKSTTVICYK--PNSNIVPLSLDINHLEIFSCT-LDAEEESAL-SIIDPFTLI 2244
Fly 2245 IELRS-----NCLNILIQKHLNIRLSYVDVK-LFSRMARLLPTQTSRPKNVISKADSDLEKAAPL 2303
Fly 2304 VAMGFEISDCLYAMQINNWRINDAAIWLSQQKQNTYRNPALEMKTA--VVDASLISVFIIDDCMD 2366
Fly 2367 A-----DVPLLEVSLSKFLLNFTFQTQDPNPKETNIRHYSLGNI--DTEVSVNYYNRRLSGWEPV 2424
Fly 2425 AETWES---------NLNWKYTK----------GHLDNKK--RFEIGIS--SKQMLKLNVTSTFI 2466
Fly 2467 ELFHMVLKNWTNDFNDNGAKNFRQRSPFIPFALQNLSGTPLLFKPIYAPLGDLTRSD---LQQVE 2528
Fly 2529 LIKNWYSVQPNETKTFDFSQKSKLRHVHSHQLNLHQIFVQIHGWTLIGP--------ISVDKVGM 2585
Fly 2586 FFRTTKLDSQFLTKSRIVFDISLIGSAQKLIKVKSSLGVIN--KLDRNVFLKMTLKGTHSDGLSS 2648
Fly 2649 ISVIKPNDELSVPLKFIDASLYVAHNTSESDAYEDTGFS-----NEEILWKACGKDDTRQLLAGY 2708
Fly 2709 DTNKSILYTFVNI--------SREIYHCKEQNLPGHKITLLPPLKINNMLCCDLMFKIH--EHAT 2763
Fly 2764 GRINSSESVNIYNVNICQ-PLNLSITLD--NFQLSGQLKIPVSHRGVIEPKLK-LIDIQKRELHV 2824
Fly 2825 RVSIQSVPGKGMELYISAPVWIINKTGLPLIYKQEGTSHTAAGQFEEHETARQVAPLMFSFSDQE 2889
Fly 2890 GSPALVLRLGKAYGSNNMWCKSFSTHKDLADR----------DLRAENTKGSYAIGISVRRGRGL 2944
Fly 2945 YACTTFVTLSPRFHLHNRSGYKLEFMQLCDIVNYDRPDPRKIISAPVDCNFAFHWPNWDQEQIIC 3009
Fly 3010 VRIPEIECCCWSKGIPIKDVQSLYINVRNEWGEMFFLRLEIISKDATFILLFTDARTLPPPIRI- 3073
Fly 3074 ----DNC-------------SEV-------VINFS-------------QLRSKPVWITPVRPQSS 3101
Fly 3102 LSYVMD-------------DPLGQQILLMEAPGGNMIEFPINNKNNI-------KKTLTYTNFIY 3146
Fly 3147 IAFQGTFERSNEEENTHRQLVLGVRGKKVVIVEKNSGDRSQLWLMNSNGQLEHEGSTPPIQTNDA 3211
Fly 3212 NAVRLVLDLEKAPNPMEFTNLVVRTPNKQRVTTQTWRFENGRLMCHANMCVQSRFGESGLKPNYE 3276
Fly 3277 AVVGRTEN----RASSSKQI---PIG-QHIVAQKLRPGSGQLELSTKMDGPISTIEICDIKIKQN 3333
Fly 3334 SVFLTPDLLWMHASLNNRQITDKGKVSFVHEYLINVELVKGIGISIIARKPCEEIMFISLDHINC 3398
Fly 3399 DIVQSALENSLDLNIAYIQIDNQLLDAVSPIALH--------TQTSNDLEETQNAVVLKLKMLPS 3455
Fly 3456 PNKNAII-FKYLTLDLKPSTASLEEKLILKVASFLGYGKINRQNLSVQYQFENTDDKPFLQDMKR 3519
Fly 3520 Y----------------YFENLSIGATQVRLSAFTSS-------------KLPV-ELHETKKALG 3554
Fly 3555 LTLIKFEDALIELDRYSDKLHFETMDVYRKELKKHYINQ-VKWHAAAILGSVDFLGNPLGFANDL 3618
Fly 3619 SEGVSGLIFE---GSV--------------KSLVKNVTHGISNSTAKLTETLSDSLGKVVLDDHD 3666
Fly 3667 NETRQRILELQSNTSGGHLAAGLKGLGFGLLGGVTSIVRHTYDGATSDGVPGFLSGLGKGLVGTV 3731
Fly 3732 TKPIIGVLDLASETASAVRETSRDSHRNAPERKRLPRCVTGAPGGLLPLYSNRQSKGQQYLYLIN 3796
Fly 3797 QKNFSE 3802 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Vps13D | NP_729825.2 | Chorein_N | 4..112 | CDD:315323 | 38/107 (36%) |
VPS13 | 147..368 | CDD:318996 | 54/255 (21%) | ||
VPS13_mid_rpt | <656..837 | CDD:318998 | 40/183 (22%) | ||
VPS13 | <2039..>2694 | CDD:330393 | 140/762 (18%) | ||
SHR-BD | 2836..3113 | CDD:310922 | 69/337 (20%) | ||
VPS13 | <3346..3802 | CDD:330393 | 120/512 (23%) | ||
Vps13a | NP_766616.2 | MRS6 | 4..>2005 | CDD:227376 | 485/2854 (17%) |
Chorein_N | 4..113 | CDD:289396 | 38/108 (35%) | ||
VPS13 | 142..371 | CDD:293513 | 54/256 (21%) | ||
TPR 1. /evidence=ECO:0000255 | 212..245 | 6/32 (19%) | |||
TPR 2. /evidence=ECO:0000255 | 373..406 | 6/36 (17%) | |||
VPS13_mid_rpt | 568..791 | CDD:293515 | 57/343 (17%) | ||
FFAT. /evidence=ECO:0000250|UniProtKB:Q96RL7 | 838..844 | 3/5 (60%) | |||
VPS13_mid_rpt | 1141..>1236 | CDD:293515 | 28/188 (15%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1343..1365 | 6/29 (21%) | |||
TPR 3. /evidence=ECO:0000255 | 1806..1840 | 6/33 (18%) | |||
TPR 4. /evidence=ECO:0000255 | 1999..2034 | 9/44 (20%) | |||
SHR-BD | 2202..2445 | CDD:284143 | 66/332 (20%) | ||
Required for mitochondrial localization. /evidence=ECO:0000250|UniProtKB:Q96RL7 | 2607..3166 | 117/506 (23%) | |||
VPS13_C | 2758..2935 | CDD:293514 | 45/177 (25%) | ||
ATG_C | 2938..3017 | CDD:286423 | 30/78 (38%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D4159at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R1642 |
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.950 |