Sequence 1: | NP_729825.2 | Gene: | Vps13D / 39448 | FlyBaseID: | FBgn0052113 | Length: | 3919 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_031754979.1 | Gene: | vps13c / 100495847 | XenbaseID: | XB-GENE-6043823 | Length: | 3768 | Species: | Xenopus tropicalis |
Alignment Length: | 4384 | Identity: | 877/4384 - (20%) |
---|---|---|---|
Similarity: | 1627/4384 - (37%) | Gaps: | 1094/4384 - (24%) |
- Green bases have known domain annotations that are detailed below.
Fly 1 MLRDLITWVLNTYLGKYLENLNSAQLSVALLSGEVELENIPIRKDALRSFNLPVEVTAGSIRKIK 65
Fly 66 LQIPVRQFRTSPWCISIEGLFCIICPKNLDNWDYEKEK--LQD------LEYKLAVLDTAEAGWR 122
Fly 123 SEKGKQMESYYF-----SSYNNWLKYGTN-----------------------MATNIIDNIELKI 159
Fly 160 SDVHFRFEDIVDTGKSKICTGIKIGSLTAQSCDCDW----TNGSYKMNNNEMNYKLVELKELSVY 220
Fly 221 WDLLHEDIKCQSY---SNQEILEKMHS--TCELR---SHNFIIKPICATAR-WKRDKCQQVIRTK 276
Fly 277 DKPRVSCELLVPEVVIDISKVQRLQMLDKLSEIRQVKEVRQYRLKRPTCTVESNPIAWWKYA--T 339
Fly 340 ICHGFDFKKNEEKW-----LMLKENLR-YMLLYKSIILN---PNE---NLSAADKEFKAY-IESD 391
Fly 392 RKISDLTIMRRICFEKVFTKGFAFESQNEQGKNMLFHWFPNWMG-WYANSPSTPNNEQDESLKHL 455
Fly 456 E-DDILVALENSLQNSSDLKSD---------AVFGH-FSIKLLKGLVILQTEDKLNDGRNKSMEM 509
Fly 510 QFNNFSAYLQLSPQLTSYTVGISLQEVYLIDKTSSDTMHNYLIKPQTGNTATPNQLVKNAALQED 574
Fly 575 ILFQLQYE-NCNHLRFQ--LNIKSKGLDLIYNEDAIQWLLDF--------LADSNSFKYSPRNRV 628
Fly 629 AKKTDFMKNWNEMFSG----NEVNRKIWMFEIEIFAPRIIFL---ENYKVSNSLMVLLDFGKLEM 686
Fly 687 RKMEVKRVIPVIESAVTENTSDDDETYLTPCSTPPASEKSGSESPTLLENPKTESFLNKNVQLEY 751
Fly 752 VLHNKIYDKYLINFTNLQVLVCKYEERW-QACLKTSSNFHLIDKFNINLTLEQRNIFTVDPEYPS 815
Fly 816 FMLFGTCPTILIHGNEELINNCCNIMKPIIKAS-KEMENIYRGGNTI----------YASERIKN 869
Fly 870 LA--------------------EDDRSRVVIEF---------------VMDQLVI--EMQSTE-R 896
Fly 897 SIAELQIIGARAGLTKEPHETNISMSVHGLLLVDAIQSFGPDFELLVASHRHVGMDSLSGSLKHS 961
Fly 962 AIVSPTSPGSPNFFD----RATSPHMITKA---------VQNIKMGDRSTEFCDDEDSTALISVD 1013
Fly 1014 IKIVPPNESNSMQLHTTSITFNSLDIIANQDTIIEILNFAKRTL--LAQNIFPSESPESPKEATE 1076
Fly 1077 APVDVVDQVDHKSHNEIF-FDFFRLNILLLYTIKRDKFNVGRKVGTVTLTEAKINASFQSDLSII 1140
Fly 1141 GSLGGIQVIDITSEAFCHPRILSVGRDQILR-----ASDTNKQTV----LSQLSNEIYSNN---Y 1193
Fly 1194 NEETKSDESDAISFQSHWSDKTTCTFQMRMASASYTHCPRFLRDVNACITYFK-----------R 1247
Fly 1248 SLREFATSIGNKATDMAKEFVQQVRAVEQIGPVYPQRNRQDNWLDIIISSPIIILPISNTSTNVL 1312
Fly 1313 IANLGKISCSNAVKCDSDE------FNESYTIEIKNTYVYSLNIDEGEYSFNVHPAKNKDAIPIL 1371
Fly 1372 HDTAITLQLYAGYSDDNDEDKQLNR------------FSIKGSMVEALKVSLNRKQYELLLESIR 1424
Fly 1425 YATNFSNEVLNESDELDQNGDIEPTANIDAESIISTTIQFSVPVFQINLQNEYHNDLINLTFKNF 1489
Fly 1490 NVKHISKGFDKDVE-VVLKSVLMEDLKSDLTSPFRNM-----------VTSVDLEQKIKKNEMTS 1542
Fly 1543 S-SCPDLPSYCNSLKNRSSSVPSCFYNHMQVKVFGGDQKYTSSNKNELGKKKESQTLVIYKSHTG 1606
Fly 1607 RSAQNG--------KLEQTSSIQFNCLNLAICVERWYTIFDFF--GLVSVDNVNEKYPEEMKLVE 1661
Fly 1662 KHIDKVCSKLKVSIRSFNFTLIRNESLLSRVNVS-NAVFMILQDPYSKI----VEGCLGSVSVND 1721
Fly 1722 LTKY-----------------GNIYKQKFLTSGTEALNF---VYKKKLVDLEALNTLDTDSTLRI 1766
Fly 1767 NMSAVHYIHTKRFSTELHVFVKDLLQ-----LQTPVIRKLKKHGS---EQNMRPSKMKLVIQADS 1823
Fly 1824 PVIVLPSSYNRNEVIIAYLGQFSLKNSFHFASDNNIISKMSATPSKD----EILDVMRIDLVNIN 1884
Fly 1885 LFSGERSSMKAKADQEKDRIIIADMNFLRLGQPFFNESCFLHLQLERNLSADAHRVCPDISVQGT 1949
Fly 1950 FSKLSGIINIQQYKLIRSFLNNNIGEQ---------TDDIYMNYHNNSCTSIERLSTINL--MPK 2003
Fly 2004 NEVSKIVSILISIRILLEDVSLLL-ALNTSQSAAI----EPLAC----IHFLKSTLEIDLFSDGS 2059
Fly 2060 QDIDLISSNILIVDERNESDKSNENVFKNILEPSKKEVRIENSVQVEVHCRKKATFSKYTIMLNN 2124
Fly 2125 MRVFALLSFLDQLKSYLQEDSP-AP-----VVNNAANQIAQKPQIDTSIS---TEYVVN----IT 2176
Fly 2177 DSEIIFAEECSRLDSNAIILKSTTVICYKPNSNIVPLS------LDINHLEIFSCTL--DAEEES 2233
Fly 2234 ALSIIDPFTLIIELRSNCLNILIQKHLNIRLSYVDVKLFSRMARLLPT--QTSRPKNVISKADSD 2296
Fly 2297 LEKAAPLVAMGFEISDCLYAMQINNWRINDAAIWLSQQKQNTYRNPALEMKTAVVDASLISVFII 2361
Fly 2362 DDC--MDADVPLLEVSLSKFLLNFTFQTQDPNPKETNIRHYSLGNI--DTEVSVNYYNRRLSGWE 2422
Fly 2423 PVAE-------TWESNLNWKYTKGHLDNKKRF-------------EIGISSKQMLKLNVTSTFIE 2467
Fly 2468 LFHMVLKNWTNDFNDNGAKNF----RQRSPFIPFALQNLSGTPLLFKPIYAPLGDLTRSDLQQVE 2528
Fly 2529 LIKNWYSVQPNETKTFDFSQKSKLRH-----VHSHQLNLHQIFVQIHGWTLIGPISVDKVG-MFF 2587
Fly 2588 RTTKLDSQFLTKSRIVFDISLIGSAQKLIKVKSSLGVINKLDRNVFLKMTLKGTHSDG--LSSIS 2650
Fly 2651 VIKPNDELSVPLKFIDASLYVAHNTSESDAYEDTGFSNEEILWKAC--GKDDTRQLLAGYDTNKS 2713
Fly 2714 ILYTFVNISR---EIYHC-----KEQNLPGHKITLLPPLKINNMLCCDLMFKIHEHATGRINSSE 2770
Fly 2771 -----SVNIYNVNICQPLNLSITLDNFQ---LSGQLKIPVSHRGVIE----------PKLKLIDI 2817
Fly 2818 QKRELHVRVSIQSVPGKGMELYISAPVWIINKTGLPLIYKQEGTSHTAAGQFEEHETARQVAPLM 2882
Fly 2883 FSFSDQE--GSPALVLRLGKAYGSNNMWCKSFSTHKDLADRDLRAENTKGSYAIGISVRRGRGLY 2945
Fly 2946 ACTTFVTLSPRFHLHNRSGYKLEFMQLCDIVNYDRPDPRKIISAPVDCNFAF--------HWPNW 3002
Fly 3003 DQEQI---ICVRIPEIECCCWSKGIPIKDVQSLYINVRNEWGEMFFLRLEIISKDATFILLFTDA 3064
Fly 3065 RTLPPPIRIDNCSEVVINFSQL--RSKPVWITPVRPQSSLSYVMDDPLGQQILLMEAPGGNMI-- 3125
Fly 3126 -EFPINNKNNIKKTLTYTNFIYIAFQGTFERSNEEENTHRQLVLGVRGKKVVIVEKNSGDRSQLW 3189
Fly 3190 LMNSNGQLEHEGSTPPIQTNDANAVRLVLDLEKAPNPMEFTNLVVRTPNKQRVTTQTWRFENGRL 3254
Fly 3255 MCHANMCVQSRFGESGLKPNYEAVVGRTENRASSSKQIPIGQHIVAQKLRPGSGQLELSTKMDGP 3319
Fly 3320 ISTIEICDIKIKQNSVFLTPDLLWMHASLNNRQITD-KGKVSFVHEYLINVE----LVKGIGISI 3379
Fly 3380 IARKPCEEIMFIS-------LDHINCDIVQSALENSLDLNIAYIQIDNQLLDAVSPIALHTQTSN 3437
Fly 3438 DLEETQNAVVLKLKMLPSPNKNAII----------FKY---------LTLD----------LKPS 3473
Fly 3474 TASLEEK----LILKVASFLGYGKINRQNLSVQYQFENTDDKPFLQDMKRYYFE------NLSIG 3528
Fly 3529 A-------TQVRLSAFTSSKLPVELHETKKALGLTLIKFEDALIELDRYSDKLHFETMDVYRKEL 3586
Fly 3587 KKHYINQVKWHAAAILGSVDFLGNPLGFANDLSEGVSGLI---FEGSV--------------KSL 3634
Fly 3635 VKNVTHGISNSTAKLTETLSDSLGKVVLDDHDNETRQRILELQSNTSGGHLAAGLKGLGFGLLGG 3699
Fly 3700 VTSIVRHTYDGATSDGVPGFLSGLGKGLVGTVTKPIIGVLDLASETASAVRETSRDSHRNAPERK 3764
Fly 3765 RLPRCVTGAPGGLLPLYSNRQSKGQQYLYLINQKNFSEKIISYEPNLWSDKEARL----RLLVST 3825
Fly 3826 EYVRIFSLSDANPTIMFECHVSEILSCHPVVTNAGTTPTTSSRASASHYIEISTNLPKITRPRIR 3890
Fly 3891 CRSEECAEAASRCINYAKSVFDEREHAVL 3919 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Vps13D | NP_729825.2 | Chorein_N | 4..112 | CDD:315323 | 38/115 (33%) |
VPS13 | 147..368 | CDD:318996 | 62/241 (26%) | ||
VPS13_mid_rpt | <656..837 | CDD:318998 | 39/184 (21%) | ||
VPS13 | <2039..>2694 | CDD:330393 | 136/717 (19%) | ||
SHR-BD | 2836..3113 | CDD:310922 | 63/291 (22%) | ||
VPS13 | <3346..3802 | CDD:330393 | 125/530 (24%) | ||
vps13c | XP_031754979.1 | MRS6 | 1..>1372 | CDD:227376 | 327/1628 (20%) |
VPS13 | 182..411 | CDD:407142 | 62/242 (26%) | ||
MRS6 | <1247..>2635 | CDD:227376 | 300/1573 (19%) | ||
SHR-BD | 2780..3030 | CDD:399561 | 67/309 (22%) | ||
MRS6 | <3198..3676 | CDD:227376 | 120/504 (24%) | ||
VPS13_C | 3336..3514 | CDD:407143 | 40/183 (22%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D4159at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 1.010 |