DRSC/TRiP Functional Genomics Resources

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Protein Alignment mirr and irx3

DIOPT Version :9

Sequence 1:NP_001261778.1 Gene:mirr / 39441 FlyBaseID:FBgn0014343 Length:682 Species:Drosophila melanogaster
Sequence 2:NP_001001216.1 Gene:irx3 / 407888 XenbaseID:XB-GENE-480486 Length:448 Species:Xenopus tropicalis


Alignment Length:404 Identity:137/404 - (33%)
Similarity:192/404 - (47%) Gaps:87/404 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   149 LAAAGGVPLGVYPEGMSAYLSG----IAADQPPFYANPAGIDLKENLVAGASPW-PYPSMYHPYD 208
            |::..|.|   |....:|...|    .:|:.|.|....:..::|:      ||. .:.:..||: 
 Frog    41 LSSVYGTP---YAAAAAAQAYGAFLPYSAELPIFPQLGSQYEMKD------SPGVQHAAFSHPH- 95

  Fly   209 AAFAGYPFNSYGMDLNGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVST 273
            |||  ||:..|... :.:|.||||||:|||||||||||:||||||||||||||||||||||||||
 Frog    96 AAF--YPYGQYQFG-DPSRPKNATRESTSTLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVST 157

  Fly   274 WFANARRRLKKENKMTWEPRNRVDDDD--ANIDDDDDKNTEDNDL----LDAKDSGVGSTDDKDR 332
            |||||||||||||||||.||:|.|::.  ...|.::||:.:|.::    :|.:|  :.|.:|.| 
 Frog   158 WFANARRRLKKENKMTWAPRSRTDEEGNAYGSDHEEDKHEDDEEIDLENIDTED--IESKEDLD- 219

  Fly   333 SGRLGDMMTDRPGESNNSEWSESRPGSPNGSPDL---YDRPGSMPPGAHPLFHPAALHHHFRPPA 394
                 |..||...:|.....|:|.  :.:|..||   .||......|...:.:.           
 Frog   220 -----DPDTDIHSDSKTDARSDSE--ASDGFEDLNAPEDRLLKSVVGQRQVLNE----------- 266

  Fly   395 GSPPDIAAYHHHQQQLLQQHQQAQQNS--------------LQTAVGGTAKPRIWSLADMAS--- 442
             .|.|..|        |....:|.|.:              |:..:....||:|||||:.|:   
 Frog   267 -EPQDKCA--------LSSDAKASQPACEQIKLDRIPSSPPLENNIPAAHKPKIWSLAETATTPD 322

  Fly   443 KDSKDSSSGAKDNHPELPPAHPGFYGHPGQ--QPSPGKILSPLAARIPNYSPYVRPDLYRGFYGP 505
            ...:..::|...|...|...| .....||.  |...|:..|.....:.|.:.:::        |.
 Frog   323 NPRRSPNTGGSVNTQNLIAQH-RLIASPGSRFQGWTGRAFSAQQLSLLNSAHFLQ--------GL 378

  Fly   506 AAAH--LGAPTQEF 517
            :.:|  ||:.|..|
 Frog   379 SVSHTALGSGTASF 392

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mirrNP_001261778.1 Homeobox_KN 242..281 CDD:283551 37/38 (97%)
irx3NP_001001216.1 Homeobox_KN 126..165 CDD:310480 37/38 (97%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 171..250 26/88 (30%)
IRO 304..321 CDD:214716 8/16 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 387..410 2/6 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 86 1.000 Domainoid score I7951
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D351833at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11211
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5654
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
77.050

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