DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mirr and Irx4

DIOPT Version :9

Sequence 1:NP_001261778.1 Gene:mirr / 39441 FlyBaseID:FBgn0014343 Length:682 Species:Drosophila melanogaster
Sequence 2:NP_001100800.1 Gene:Irx4 / 306655 RGDID:1309309 Length:515 Species:Rattus norvegicus


Alignment Length:576 Identity:175/576 - (30%)
Similarity:233/576 - (40%) Gaps:145/576 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 PHSSAPGGAPAPGAGNPPNRCCDTGRTIYTD---PVSGQTICSCQ-YD--MLNYQRLAAAGGVPL 157
            |:||||......   |..:.||::|.....|   ..|.|....|. |:  :|...|........|
  Rat     9 PYSSAPQFLMTT---NSLSTCCESGGRTLADSGPAASAQAPVYCPVYESRLLATARHELNSAAAL 70

  Fly   158 GVY------PEGMSAYLSGIAADQPPFYANPAGIDLKENLVAGAS----PWPYPSMYHPYDAAFA 212
            |||      .:|...|:: ..::...||:..: .:.|:.  .|:|    |....:.|:||:....
  Rat    71 GVYGSPYSSSQGYGNYVT-YGSEASAFYSLNS-FESKDG--TGSSHAGLPPTAAAAYYPYEPTLG 131

  Fly   213 GYPFNSYGMDLNGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFAN 277
            .||::.||...:|.|||||||||||||||||.||:||||||||||||||||||||||||||||||
  Rat   132 QYPYDRYGTVDSGTRRKNATRETTSTLKAWLQEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFAN 196

  Fly   278 ARRRLKKENKMTWEPRNRVDDD-----DANIDDDDDKNTEDNDLLDAKDSGVGSTDDKDRSGRLG 337
            |||||||||||||.|||:..|:     :...::..::.:.:..|...|..|....:||:.  .|.
  Rat   197 ARRRLKKENKMTWPPRNKCADEKRPYGEGEEEEAGEEESREEPLKSVKSEGPAGKEDKEL--ELS 259

  Fly   338 DMMTDRPGESNNSEWSESRPGSPNGS-----PDLYDRPGSMPPGAHPLFHPAALHHHFRPPAGS- 396
            |:....|.::..||.....|..|..|     |...|.||:....      |..|    |.|.|: 
  Rat   260 DLEDFDPLDTETSECELKTPFQPLDSVPERIPPSSDGPGTGKEA------PVTL----RMPLGTA 314

  Fly   397 ---------------------PPDIAAYHHHQQQLLQQHQQAQQNSLQTAVGGT-----AKPRIW 435
                                 .||..|         :...||.:..|..|..|.     .|||||
  Rat   315 DGAVMDGDLERARNCLRSTVVAPDSGA---------EGGPQACEAKLTFAPAGAPPNLETKPRIW 370

  Fly   436 SLADMASKDS---------------KDSSSGAKDNHPELPPAHPGFYG----HPGQQPSPGKILS 481
            |||..|:..:               :..|:||....|...||.|...|    |   |.||     
  Rat   371 SLAHTATAAAATALSQTEFPSCMLKRQGSTGASAVTPASSPAVPAASGTLDRH---QDSP----- 427

  Fly   482 PLAARIPNYSPYVRPDLYRGFYGPAAAHLGAPTQEFLEHQRTFGASLAAHNGPLGMNPLLWKAAV 546
              ...:.|:...|       |:.|...|      ..|..............||||.|        
  Rat   428 --VTSLRNWVDGV-------FHDPILRH------STLNQAWATAKGALLDPGPLGRN-------- 469

  Fly   547 SGAANGHHFAPLSLTTSGGSSGGQQVAPPPVASPSASSSSSSMGCDVVHIPTSSGQ 602
            .||.......||:.:.        :...|...||:.:|.      :::..|.:||:
  Rat   470 LGAGTNVLTTPLACSF--------RPTVPQDVSPAGASR------ELLATPKASGK 511

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mirrNP_001261778.1 Homeobox_KN 242..281 CDD:283551 36/38 (95%)
Irx4NP_001100800.1 Homeobox_KN 161..200 CDD:283551 36/38 (95%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0773
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D351833at33208
OrthoFinder 1 1.000 - - FOG0001669
OrthoInspector 1 1.000 - - mtm9040
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11211
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1407
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
98.880

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