DRSC/TRiP Functional Genomics Resources

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Protein Alignment mirr and Pknox1

DIOPT Version :10

Sequence 1:NP_001261778.1 Gene:mirr / 39441 FlyBaseID:FBgn0014343 Length:682 Species:Drosophila melanogaster
Sequence 2:NP_057879.2 Gene:Pknox1 / 18771 MGIID:1201409 Length:436 Species:Mus musculus


Alignment Length:175 Identity:47/175 - (26%)
Similarity:69/175 - (39%) Gaps:49/175 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   130 PVSGQTICSCQYDMLNYQRLAAAGGVPLGVYPEG--MSAYLSGIAADQPPFYANPAG-------- 184
            ||..|.|.|.....|:.|.:.    ||.....:|  ..|.::|....||.....|.|        
Mouse   170 PVQSQQIQSAITGTLSPQGIV----VPASALQQGNVTMATVAGGTVYQPVTVVTPQGQVVTQALS 230

  Fly   185 ------------IDLKENLVAGASPWPYPSMYHPYDAAFAGYPFNSYGMDLNGARRKNATRETTS 237
                        :.|.::|          |:.|..|           |...|  :|....:..|:
Mouse   231 PGTIRIQNSQLQLQLNQDL----------SILHQED-----------GSSKN--KRGVLPKHATN 272

  Fly   238 TLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRL 282
            .:::||.:|..:||||:.||..:|..|.:||.||:.||.|||||:
Mouse   273 VMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRI 317

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mirrNP_001261778.1 Homeobox_KN 243..281 CDD:428673 19/37 (51%)
Pknox1NP_057879.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 23..50
Meis_PKNOX_N 80..165 CDD:465140
Homeobox_KN 278..316 CDD:428673 19/37 (51%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 401..436
Blue background indicates that the domain is not in the aligned region.

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