DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mirr and Irx3

DIOPT Version :9

Sequence 1:NP_001261778.1 Gene:mirr / 39441 FlyBaseID:FBgn0014343 Length:682 Species:Drosophila melanogaster
Sequence 2:NP_001240751.1 Gene:Irx3 / 16373 MGIID:1197522 Length:522 Species:Mus musculus


Alignment Length:656 Identity:191/656 - (29%)
Similarity:260/656 - (39%) Gaps:198/656 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 TLPTLACPAAQPL---SAPGIAGPGHSGMVTSTVPPGARSTSPCGPSAGLPALSLVGAPPPGPHS 101
            :.|.|.....:||   ..||.||.|..|.     ..|.||    ||.||...|:..|:       
Mouse     2 SFPQLGYQYIRPLYPPERPGAAGGGGGGS-----SAGGRS----GPGAGASELAASGS------- 50

  Fly   102 SAPGGAPAPGAGNPPNRCCDTGRTIYTDPVSGQTICSCQYDMLNYQRLAAAGGVPLGVYPEGMSA 166
                             ..:...::|..|               |...|||...     .:|..|
Mouse    51 -----------------LSNVLSSVYGAP---------------YAAAAAAAAA-----AQGYGA 78

  Fly   167 YLSGIAADQPPFYANPAGIDLKEN------LVAGASPWPYPSMYHPYDAAFAGYPFNSYGMDLNG 225
            :|. .|.:.|.|....|..:||::      ..|.|.|.|:|:.| ||.....|.|          
Mouse    79 FLP-YATELPIFPQLGAQYELKDSPGVQHPATAAAFPHPHPAFY-PYGQYQFGDP---------- 131

  Fly   226 ARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTW 290
            :|.||||||:|||||||||||:|||||||||||||||||||||||||||||||||||||||||||
Mouse   132 SRPKNATRESTSTLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTW 196

  Fly   291 EPRNRVD-----------DDDANIDDDDDK---NTEDNDLLDAKDSGVG---STDDKDR------ 332
            .||:|.|           ::|...|:::.|   ..|:.:|...::...|   :.||:|.      
Mouse   197 APRSRTDEEGNAYGSEREEEDEEEDEEESKRELEMEEEELAGEEEDTGGEGLADDDEDEEIDLEN 261

  Fly   333 --SGRLGDMMT-----DRPGESNNSEWSESRPG-SPNGSPDLYDRPGSM-------PPGAHPLFH 382
              |...|..:|     .|.|:......|:.:.. |.:.|..|.|||.|:       ||.|.....
Mouse   262 LDSAAAGSELTLAGAAHRNGDFGLGPISDCKTSDSDDSSEGLEDRPLSVLSLAPPPPPVARAPAS 326

  Fly   383 PAALHHHFRPPAGSPPDIAAYHHHQQQLLQQHQQAQQNSLQTAVGGTAKPRIWSLADMASKDSKD 447
            |.:      ||:...|...|             .|..::||       ||:|||||:.|:     
Mouse   327 PPS------PPSSLDPCAPA-------------PAPSSALQ-------KPKIWSLAETAT----- 360

  Fly   448 SSSGAKDNHPELPPAHPGFYGHPGQQPSPGKILSPLAARIPNYSPYVRPDLYRGFYGPAAAHLGA 512
                :.|| |...|  ||..|.|     ||..::|...::                .||||    
Mouse   361 ----SPDN-PRRSP--PGAGGSP-----PGAAVAPPTLQL----------------SPAAA---- 393

  Fly   513 PTQEFLEHQRTFGASLAAH---NGPLGMNPLLWKAAVSGAANGHHFAPLSLTTSG--------GS 566
                        .|:.|||   :.|||..|........|...|....|||:..|.        |:
Mouse   394 ------------AAAAAAHRLVSAPLGKFPAWTNRPFPGPPAGPRPHPLSMLGSAPQHLLGLPGA 446

  Fly   567 SGGQQVAPPPVASPSASSSSSSMGCDVVHIPTSSGQSAAQHMMGPISSNSTASSSSSHSGKISPG 631
            :|....|....|.|:...|.:....::..:|....:|.::.:............:...|.::||.
Mouse   447 AGHPAAAAAAYARPAEPESGTGDKKNIAVVPWKWRKSYSRQLSSRCQGGHRTIWTLLWSYQLSPR 511

  Fly   632 VNVTSL 637
            :|.:::
Mouse   512 LNFSTI 517

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mirrNP_001261778.1 Homeobox_KN 242..281 CDD:283551 37/38 (97%)
Irx3NP_001240751.1 Homeobox_KN 148..187 CDD:283551 37/38 (97%)
IRO 345..362 CDD:214716 10/32 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 86 0.375 Domainoid score I8067
eggNOG 1 0.900 - - E1_KOG0773
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 181 1.000 Inparanoid score I3968
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11211
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5654
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
77.040

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