DRSC/TRiP Functional Genomics Resources

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Protein Alignment caup and RPL

DIOPT Version :10

Sequence 1:NP_524046.2 Gene:caup / 39440 FlyBaseID:FBgn0015919 Length:693 Species:Drosophila melanogaster
Sequence 2:NP_195823.1 Gene:RPL / 831745 AraportID:AT5G02030 Length:575 Species:Arabidopsis thaliana


Alignment Length:469 Identity:97/469 - (20%)
Similarity:149/469 - (31%) Gaps:167/469 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 SQSGHGGGSPL------------SGTNEASLSPSGGSTATGLTAGPLSPG--AVSQSSHHAGHKG 75
            |..|.||..||            |..|...:|....|...|...||.|..  ||:.:..|:.:.|
plant    37 SSGGGGGVFPLADSDFLAAGGFHSNNNNNHISNPSYSNFMGFLGGPSSSSSTAVAVAGDHSFNAG 101

  Fly    76 LSTSPAEDVVGGDV------PVGLS-----------------------------SAAQDLPSRGS 105
            ||:        |||      |:.||                             :||..:.||.|
plant   102 LSS--------GDVLVFKPEPLSLSLSSHPRLAYDLVVPGVVNSGFCRSAGEANAAAVTIASRSS 158

  Fly   106 ----------------------------CCENGRPIITDPVSGQTVCSCQYDPARLAIGGYSRMA 142
                                        .|..||.|.||.|......|..:||....:.|.|   
plant   159 GPLGPFTGYASILKGSRFLKPAQMLLDEFCNVGRGIYTDKVIDDDDSSLLFDPTVENLCGVS--- 220

  Fly   143 LPSGGVG---------VGVYGGPYPSNEQNPYPSI-----------GVDNSAFYAPLS------- 180
              .||.|         :.:....|...:|. |..:           |:.::|.||.|:       
plant   221 --DGGGGDNGKKKSKLISMLDEVYKRYKQY-YEQLQAVMGSFECVAGLGHAAPYANLALKALSKH 282

  Fly   181 ---------------------------NPYGIKDTSPSTEMSAWTSASLQSTTGYYSYDPTLAAY 218
                                       :|...::.:.|.......|:....:.|.....|...|.
plant   283 FKCLKNAITDQLQFSHNNKIQQQQQCGHPMNSENKTDSLRFGGSDSSRGLCSAGQRHGFPDHHAP 347

  Fly   219 GYGPNYDLAARRKNATRESTATLKAWLSEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 283
            .:.|:..|..|       :...|:|||.:|..:||||..:|:|||..|.::..|||.||.|||.|
plant   348 VWRPHRGLPER-------AVTVLRAWLFDHFLHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVR 405

  Fly   284 LKKENKMTWEPKNKTEDDDDGMMSDDEKEKDAGDG---GKLSTEAFDPGNQLIKSELGKAEKEVD 345
            :       |:|.    .::..|:...:.::.:...   .:.||..| |.|.........|::..:
plant   406 V-------WKPM----VEEIHMLETRQSQRSSSSSWRDERTSTTVF-PDNSNNNPSSSSAQQRPN 458

  Fly   346 SSGDQKLDLDREPH 359
            :|...:...:.:.|
plant   459 NSSPPRRARNDDVH 472

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
caupNP_524046.2 Homeobox_KN 245..283 CDD:428673 19/37 (51%)
IRO 455..472 CDD:214716
RPLNP_195823.1 POX 165..292 CDD:214728 23/132 (17%)
Homeobox_KN 367..405 CDD:428673 19/37 (51%)
Blue background indicates that the domain is not in the aligned region.

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