DRSC/TRiP Functional Genomics Resources

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Protein Alignment caup and Meis1

DIOPT Version :10

Sequence 1:NP_524046.2 Gene:caup / 39440 FlyBaseID:FBgn0015919 Length:693 Species:Drosophila melanogaster
Sequence 2:NP_001423917.1 Gene:Meis1 / 686117 RGDID:1585482 Length:465 Species:Rattus norvegicus


Alignment Length:311 Identity:73/311 - (23%)
Similarity:116/311 - (37%) Gaps:101/311 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   192 TEMSAWT-----SASLQ-------STTGYYSY------------DPTLAAYGYG----PNYDLAA 228
            |:..:|.     :||.:       |:.|:.|:            |.::|:...|    |:.|...
  Rat   208 TDQPSWNRDHDDTASTRSGGTPGPSSGGHTSHSGDNSSEQGDGLDNSVASPSTGDDDDPDKDKKR 272

  Fly   229 RRKNATRESTAT--LKAWLSEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMT 291
            .:|.......||  ::|||.:|..:|||::.:|..||..|.:|:.||:.||.|||||:.:.    
  Rat   273 HKKRGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQP---- 333

  Fly   292 WEPKNKTEDDDDGMMSDDEKEKDAGDGGKLSTEAFDPGNQLIKSELGKAEKEVDSSGDQKLDLDR 356
                          |.|....  ||:.|    ..::|..|.:...:        ..|.|.:.: |
  Rat   334 --------------MIDQSNR--AGNQG----TPYNPDGQPMGGFV--------MDGQQHMGI-R 369

  Fly   357 EPHNLVAMRGLAPYATPPGAHPMHAAYSSYAQSHNTHTHPHPQQMQHHQQQQQQQQNQQQLQHHQ 421
            .| .|.:|.|  .|....|...:.....||.|:   ...|||.|::|...           .|..
  Rat   370 AP-GLQSMPG--EYVARGGPMGVSMGQPSYTQA---QMPPHPAQLRHGPP-----------MHTY 417

  Fly   422 MDQPYYHP-----GGYGQEESGEFAAQKNPLSRDCGIPVPASKPKIWSVAD 467
            :....:||     ||           |.:|     |:|:.||.|.:.:..|
  Rat   418 IPGHPHHPAVMMHGG-----------QPHP-----GMPMSASSPSVLNTGD 452

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
caupNP_524046.2 Homeobox_KN 245..283 CDD:428673 17/37 (46%)
IRO 455..472 CDD:214716 4/13 (31%)
Meis1NP_001423917.1 None

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