Protein Alignment caup and hth

DIOPT Version :10

• Sequence 1: NP_524046.2
• Gene: caup / 39440
• FlyBaseID: FBgn0015919
• Length: 693
• Species: Drosophila melanogaster
• Sequence 2: NP_476576.1
• Gene: hth / 41273
• FlyBaseID: FBgn0001235
• Length: 487
• Species: Drosophila melanogaster
• Alignment Length: 336
• Identity: 84/336 - (25%)
• Similarity: 125/336 - (37%)
• Gaps: 115/336 - (34%)

  Fly    14 TANQLTTANTDSQSGHGGGS-----PLSGT-------NEASLSPSGGSTATGLTAGPLSPGAVSQ 66
            :||....:|.||.|...|.|     |.|.:       |:.:.||..|||          ||.:||
  Fly   219 SANGEGRSNADSTSHTDGASTPDVRPPSSSLSYGGAMNDDARSPGAGST----------PGPLSQ 273

  Fly    67 SSHHAGHKGLSTSPAEDVVGGDVPVGLSSAAQDLPSRGSCCENGRPIITDPVSGQTVCSCQYDPA 131
            .           .||.|.                              :|| .|:.:.|  .:|:
  Fly   274 Q-----------PPALDT------------------------------SDP-DGKFLSS--LNPS 294

  Fly   132 RLAIGG-YSRMALPSGGVGVGVYGGPYPSNEQNPYPSIGVDNSAFYAPLSNPYGIKDTSPSTEMS 195
            .|...| :.|....|            |::.:|...|..:.:|.|.....| :|   ||.|.:.|
  Fly   295 ELTYDGRWCRREWSS------------PADARNADASRRLYSSVFLGSPDN-FG---TSASGDAS 343

  Fly   196 AWTSASLQSTTGYYSYDPTLAAYGYGPNYDLAARRKNATRE------STATLKAWLSEHKKNPYP 254
               :||:.|            ..|.|...|.|:.:||..:.      :|..|:|||.:|..:|||
  Fly   344 ---NASIGS------------GEGTGEEDDDASGKKNQKKRGIFPKVATNILRAWLFQHLTHPYP 393

  Fly   255 TKGEKIMLAIITKMTLTQVSTWFANARRR-----LKKENKMTWEP---KNKTEDDDDGMMSDDE- 310
            ::.:|..||..|.:|:.||:.||.|||||     :.:.|:..:.|   .:....|..|.|.|.:
  Fly   394 SEDQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVYTPHPGPSGYGHDAMGYMMDSQA 458

  Fly   311 --KEKDAGDGG 319
              ..:..||.|
  Fly   459 HMMHRPPGDPG 469

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
caup	NP_524046.2	Homeobox_KN	245..283	CDD:428673	17/37 (46%)
		IRO	455..472	CDD:214716
hth	NP_476576.1	Meis_PKNOX_N	127..211	CDD:465140
		Homeobox_KN	384..422	CDD:428673	17/37 (46%)