Protein Alignment caup and irx4a

DIOPT Version :10

• Sequence 1: NP_524046.2
• Gene: caup / 39440
• FlyBaseID: FBgn0015919
• Length: 693
• Species: Drosophila melanogaster
• Sequence 2: XP_021322341.1
• Gene: irx4a / 402999
• ZFINID: ZDB-GENE-040426-1825
• Length: 441
• Species: Danio rerio
• Alignment Length: 459
• Identity: 161/459 - (35%)
• Similarity: 202/459 - (44%)
• Gaps: 130/459 - (28%)

  Fly    94 SSAAQDL---PSRGSCCENGRPIITDPVSGQTVCSCQYDPARLAIGGYSRMALPSGGVGVGVYGG 155
            |||.|.|   .|..||||:....|.|. |.||...|....:||.......:   |....:||||.
Zfish    11 SSAPQFLMTTNSLTSCCESSTRSIPDS-SAQTPVYCPVYESRLLATARHEL---SSAAALGVYGS 71

  Fly   156 PYPSNE-QNPYPSIGVDNSAFYAPLSNPYGIKDTSPSTEMSAWTSASLQSTTGYYSYDPTLAAYG 219
            ||...: ...|.:.|.|.||||:  ...:..||.|.|..      |.:.....||.|||||..|.
Zfish    72 PYTGGQGYGNYVTYGADASAFYS--LGTFDAKDGSASAH------AGITPAAAYYPYDPTLGQYQ 128

  Fly   220 YG--PNYDLAARRKNATRESTATLKAWLSEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARR 282
            |.  .:.:...||||||||:|:||||||.||:|||||||||||||||||||||||||||||||||
Zfish   129 YDRYGSMEGGTRRKNATRETTSTLKAWLQEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARR 193

  Fly   283 RLKKENKMTWEPKN------KTEDDDDGM--------MSDDEKEKDAGDGG-KLS-TEAFDPGNQ 331
            ||||||||||.|:|      |.:||:||.        .:||.:.||..|.. :|| .|.|||
Zfish   194 RLKKENKMTWPPRNKGSDEKKYDDDEDGSPEEQIKSETNDDAESKDREDKDLQLSDLEDFDP--- 255

  Fly   332 LIKSELGKAE--------KEVDSSGDQKLDLDREPHNLVAMRGLAPYATPPGAHPMHAAYSSYAQ 388
             ::||..:.|        ..:::...|||.:                   ||.  :..|.|....
Zfish   256 -LESESPECELKHRFQISAHMETKDPQKLSI-------------------PGL--LEEAKSCLKS 298

  Fly   389 SHNTHTHPHPQQMQHHQQ--QQQQQQNQQQLQHHQMDQPYYHPGGYGQEESGEFAAQKNPLSRDC 451
            ..:...     :::|.:.  ||||||:.
Zfish   299 PEDCEL-----ELRHSKACFQQQQQQSH------------------------------------- 321

  Fly   452 GIPVPASKPKIWSVADTAACKTPPPTAAYLGQNFYPPSSA-----DQQLP------------HQP 499
              |:..|||:|||:|.||....|....:.:.:....||.|     .|..|            |.|
Zfish   322 --PILDSKPRIWSLAQTATSLNPAEFPSCMLRCPASPSPAGGPDRQQDSPVTTLRNWVDGVFHDP 384

  Fly   500 LQQH 503
            |.:|
Zfish   385 LFRH 388

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
caup	NP_524046.2	Homeobox_KN	245..283	CDD:428673	35/37 (95%)
		IRO	455..472	CDD:214716	9/16 (56%)
irx4a	XP_021322341.1	COG5576	<140..245	CDD:227863	72/104 (69%)
		Homeobox_KN	156..194	CDD:428673	35/37 (95%)