DRSC/TRiP Functional Genomics Resources

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Protein Alignment caup and irx4a

DIOPT Version :9

Sequence 1:NP_524046.2 Gene:caup / 39440 FlyBaseID:FBgn0015919 Length:693 Species:Drosophila melanogaster
Sequence 2:XP_021322341.1 Gene:irx4a / 402999 ZFINID:ZDB-GENE-040426-1825 Length:441 Species:Danio rerio


Alignment Length:459 Identity:161/459 - (35%)
Similarity:202/459 - (44%) Gaps:130/459 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 SSAAQDL---PSRGSCCENGRPIITDPVSGQTVCSCQYDPARLAIGGYSRMALPSGGVGVGVYGG 155
            |||.|.|   .|..||||:....|.|. |.||...|....:||.......:   |....:||||.
Zfish    11 SSAPQFLMTTNSLTSCCESSTRSIPDS-SAQTPVYCPVYESRLLATARHEL---SSAAALGVYGS 71

  Fly   156 PYPSNE-QNPYPSIGVDNSAFYAPLSNPYGIKDTSPSTEMSAWTSASLQSTTGYYSYDPTLAAYG 219
            ||...: ...|.:.|.|.||||:  ...:..||.|.|..      |.:.....||.|||||..|.
Zfish    72 PYTGGQGYGNYVTYGADASAFYS--LGTFDAKDGSASAH------AGITPAAAYYPYDPTLGQYQ 128

  Fly   220 YG--PNYDLAARRKNATRESTATLKAWLSEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARR 282
            |.  .:.:...||||||||:|:||||||.||:|||||||||||||||||||||||||||||||||
Zfish   129 YDRYGSMEGGTRRKNATRETTSTLKAWLQEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARR 193

  Fly   283 RLKKENKMTWEPKN------KTEDDDDGM--------MSDDEKEKDAGDGG-KLS-TEAFDPGNQ 331
            ||||||||||.|:|      |.:||:||.        .:||.:.||..|.. :|| .|.|||   
Zfish   194 RLKKENKMTWPPRNKGSDEKKYDDDEDGSPEEQIKSETNDDAESKDREDKDLQLSDLEDFDP--- 255

  Fly   332 LIKSELGKAE--------KEVDSSGDQKLDLDREPHNLVAMRGLAPYATPPGAHPMHAAYSSYAQ 388
             ::||..:.|        ..:::...|||.:                   ||.  :..|.|....
Zfish   256 -LESESPECELKHRFQISAHMETKDPQKLSI-------------------PGL--LEEAKSCLKS 298

  Fly   389 SHNTHTHPHPQQMQHHQQ--QQQQQQNQQQLQHHQMDQPYYHPGGYGQEESGEFAAQKNPLSRDC 451
            ..:...     :::|.:.  ||||||:.                                     
Zfish   299 PEDCEL-----ELRHSKACFQQQQQQSH------------------------------------- 321

  Fly   452 GIPVPASKPKIWSVADTAACKTPPPTAAYLGQNFYPPSSA-----DQQLP------------HQP 499
              |:..|||:|||:|.||....|....:.:.:....||.|     .|..|            |.|
Zfish   322 --PILDSKPRIWSLAQTATSLNPAEFPSCMLRCPASPSPAGGPDRQQDSPVTTLRNWVDGVFHDP 384

  Fly   500 LQQH 503
            |.:|
Zfish   385 LFRH 388

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
caupNP_524046.2 Homeobox_KN 244..283 CDD:283551 36/38 (95%)
IRO 455..472 CDD:214716 9/16 (56%)
irx4aXP_021322341.1 Abdominal-A <140..245 CDD:332641 72/104 (69%)
Homeobox_KN 155..194 CDD:310480 36/38 (95%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 75 1.000 Domainoid score I9005
eggNOG 1 0.900 - - E1_KOG0773
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D351833at33208
OrthoFinder 1 1.000 - - FOG0001669
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11211
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1407
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
87.880

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