DRSC/TRiP Functional Genomics Resources

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Protein Alignment caup and tgif1

DIOPT Version :9

Sequence 1:NP_524046.2 Gene:caup / 39440 FlyBaseID:FBgn0015919 Length:693 Species:Drosophila melanogaster
Sequence 2:XP_012819925.1 Gene:tgif1 / 395014 XenbaseID:XB-GENE-853021 Length:322 Species:Xenopus tropicalis


Alignment Length:293 Identity:75/293 - (25%)
Similarity:110/293 - (37%) Gaps:75/293 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   229 RRKNATRESTATLKAWLSEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR-----LKKEN 288
            ||.|..:||...|:.||.||:.|.||::.||.:|:..|.::..||..||.|||||     |:|:.
 Frog    88 RRGNLPKESVQILRDWLYEHRYNAYPSEQEKALLSRQTHLSTLQVCNWFINARRRLLPDMLRKDG 152

  Fly   289 KMTWEPKNKTEDDDDGMMSDDEKEKDAGDGGKLSTEAFDPGNQLIKSELGKAEKEVDSSGDQKLD 353
            |   :| |:......|....|..:.|:..|.|......|. |....:..|..:    |||  || 
 Frog   153 K---DP-NQFTISRKGAKISDVIQMDSPTGTKPYIPTIDE-NSFHFTSSGPNQ----SSG--KL- 205

  Fly   354 LDREPHNLVAMRGLAPYATPPG---AHP---MHAAYSSYAQSHNTHTHP-HPQQMQHHQQQQQQQ 411
                         ||...:||.   |.|   .|...:|.:.:....||. :..|:...||.:...
 Frog   206 -------------LASKLSPPQSLLARPSVICHTTVTSLSDAPFNFTHVLNAGQIPDPQQTEASN 257

  Fly   412 QNQQQLQHHQMDQPYYHPGGYGQEESGEFAAQKNPLSRDCGIPVPASKPKIWSVADTAACKTPPP 476
            ..:..:.:|              |::.:.....|                    |.:....||||
 Frog   258 LTETSILYH--------------EDTSKLGQNTN--------------------AQSGLFNTPPP 288

  Fly   477 TAAYLGQNFYPPSSADQQLPHQPLQQHQQQQLQ 509
            |.....|:|    |..|.|....|:|..:.:||
 Frog   289 TPPDHNQDF----SGFQLLVDVALKQAAEMELQ 317

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
caupNP_524046.2 Homeobox_KN 244..283 CDD:283551 18/38 (47%)
IRO 455..472 CDD:214716 1/16 (6%)
tgif1XP_012819925.1 Homeobox_KN 103..142 CDD:368670 18/38 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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