Protein Alignment caup and pknox2

DIOPT Version :10

• Sequence 1: NP_524046.2
• Gene: caup / 39440
• FlyBaseID: FBgn0015919
• Length: 693
• Species: Drosophila melanogaster
• Sequence 2: NP_705940.1
• Gene: pknox2 / 386959
• ZFINID: ZDB-GENE-031118-112
• Length: 474
• Species: Danio rerio
• Alignment Length: 309
• Identity: 63/309 - (20%)
• Similarity: 105/309 - (33%)
• Gaps: 136/309 - (44%)

  Fly   154 GGPYPSNE----------QNPYPSI-----GVDNSAFYAPLSNPYGIKDTSPSTEMSAWTSASLQ 203
            ||||..::          |:..||:     .|::|....| :.|....:.|       .|:.:.|
Zfish   180 GGPYSPSQTSLGLQQDLLQSSSPSLTSVSSTVNSSGIVVP-AGPLQQNNIS-------MTTINSQ 236

  Fly   204 STTGYYSYDPTLAAYGYGP------------------NYDLAA-------RRKN----ATRESTA 239
            ..:|...|.|.......|.                  |.||::       :.||    ..:.:|.
Zfish   237 VVSGGTLYQPVAMVTSQGQVLTQGLPQGTIQIQNNQVNLDLSSLLDGDDKKSKNKRGVLPKHATN 301

  Fly   240 TLKAWLSEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR-------------------LK 285
            .:::||.:|..:||||:.||..:|..|.:||.||:.||.|||||                   :|
Zfish   302 IMRSWLFQHLMHPYPTEDEKRQIAAQTNLTLLQVNNWFINARRRILQPMLDASNPDPAPKAKKMK 366

  Fly   286 KENKMT---W-----------------------------------------------------EP 294
            .:::.|   |                                                     |.
Zfish   367 SQHRPTQRFWPDSIVAGVLQTHGTNNSDNSLGMDGLQPLSSDSATLAMQQAMLGGTDDSMDGTEE 431

  Fly   295 KNKTEDDDDGMMSDDEKEKDAGDGGKLSTEAFDPGNQLIKSELGKAEKE 343
            :::.|::|:|:..||::|.|         |..:...|:|:.:||....|
Zfish   432 EDEEEEEDEGLDEDDDEEDD---------EEHEASRQMIRRDLGLNHNE 471

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
caup	NP_524046.2	Homeobox_KN	245..283	CDD:428673	19/37 (51%)
		IRO	455..472	CDD:214716
pknox2	NP_705940.1	Meis_PKNOX_N	95..180	CDD:465140	63/309 (20%)
		Homeobox_KN	307..345	CDD:428673	19/37 (51%)