DRSC/TRiP Functional Genomics Resources

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Protein Alignment caup and achi

DIOPT Version :9

Sequence 1:NP_524046.2 Gene:caup / 39440 FlyBaseID:FBgn0015919 Length:693 Species:Drosophila melanogaster
Sequence 2:NP_001286352.1 Gene:achi / 36373 FlyBaseID:FBgn0033749 Length:555 Species:Drosophila melanogaster


Alignment Length:424 Identity:89/424 - (20%)
Similarity:139/424 - (32%) Gaps:88/424 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   223 NYDLAARRKNATRESTATLKAWLSEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 287
            |..|..||.|..:.|...||.||.||:.|.||:..||..|:....:|:.||..||.|||||:..|
  Fly    90 NGSLRKRRGNLPKTSVKILKRWLYEHRYNAYPSDAEKFTLSQEANLTVLQVCNWFINARRRILPE 154

  Fly   288 NKMTWEPKNKTEDDDD--------GMMSDDEKEKDAGDGGKLSTEAFDPGNQLIKSELGKAEKEV 344
                   ..:.|.:|.        |........:.:..|..|:......|:...:..:| |.:||
  Fly   155 -------MIRREGNDPLHFTISRRGKKVSPNCSRSSALGANLTGPNPAHGSPASEVVVG-ATEEV 211

  Fly   345 DSSGDQKLDLDREPHNLVA--MRGLAPYATPPGAH--PMHAAYSS---YAQSHNTHTHPHPQQMQ 402
            |.:|        |.|..:|  :.....|...|...  .|...|..   |:.......:|...|..
  Fly   212 DGAG--------EIHEGIANVLTNFEQYVQGPNGQMVKMEPEYEDSVIYSWQQAIANNPMGFQSL 268

  Fly   403 HHQQQQ---QQQQNQQQLQHHQMDQPYYHPGGYGQEESGEFAAQKNPLSRDCGIPVPASKPKIWS 464
            |...|.   .:.:|.|..:...:.......||.|...|..               .||:....:|
  Fly   269 HSSLQATMIDKIKNYQMRKAAAIGGSAVGSGGAGGSSSNS---------------SPATSILPYS 318

  Fly   465 VADTAACKTPPPTAAYLGQNFYPPSSADQQLPHQPLQQHQQQQLQQLQQQQQHHHHPHHHHPHHS 529
            :               .||  .||...|::.|..|         ::::.:......|..:.....
  Fly   319 L---------------FGQ--LPPEFDDEEKPRPP---------KRVRTRTVAAKSPRENAKQAK 357

  Fly   530 MELGSPLSMMSSYA---GGSPYSRIPTAYTEAMGMHLPSSSSSSSSTGKLPPTHIHPAPQRVGFP 591
            .:.|:....|..|.   ||...|  |.:..|.......|...:|....:...:|...:..:..|.
  Fly   358 QKTGNKQETMYCYKDSYGGIVVS--PRSEGEESAQGYESCGPNSEEEVRFETSHDWQSVIKTVFG 420

  Fly   592 EIQPDTPPQTPPTMKLNSSGGSSSSSGSSHSSSM 625
            ..:..|.....|        |:|.|.||..::::
  Fly   421 TEEVSTSAGNNP--------GTSGSKGSVQNTAI 446

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
caupNP_524046.2 Homeobox_KN 244..283 CDD:283551 18/38 (47%)
IRO 455..472 CDD:214716 3/16 (19%)
achiNP_001286352.1 Homeobox_KN 111..150 CDD:283551 18/38 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0773
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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