DRSC/TRiP Functional Genomics Resources

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Protein Alignment caup and irx3b

DIOPT Version :10

Sequence 1:NP_524046.2 Gene:caup / 39440 FlyBaseID:FBgn0015919 Length:693 Species:Drosophila melanogaster
Sequence 2:NP_998265.2 Gene:irx3b / 321806 ZFINID:ZDB-GENE-030131-525 Length:343 Species:Danio rerio


Alignment Length:421 Identity:136/421 - (32%)
Similarity:184/421 - (43%) Gaps:124/421 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   136 GGYSRMALPSGGVG---VGVYGGPYPSNEQN-----PYPS-IGVDNSAFYAPLSNPYGIKDTSPS 191
            ||.......||.:.   .||||.|:.|..|.     ||.| :.|.|.     ||:.|..|| ||.
Zfish    21 GGAEISVTGSGSLSSALSGVYGAPFASTAQGYSAFLPYSSDLSVLNQ-----LSSQYEFKD-SPG 79

  Fly   192 TEMSAWTSASLQSTTGYYSYDPTLAAYGYGPNYDLA--ARRKNATRESTATLKAWLSEHKKNPYP 254
            .:.:.:               |..|.|.||..|...  :|.||||||||:|||||||||:|||||
Zfish    80 LQHAGF---------------PHAAFYPYGHQYQFGDPSRPKNATRESTSTLKAWLSEHRKNPYP 129

  Fly   255 TKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWEPKNKTEDDDDGMMSDDEKEKDAGDGG 319
            ||||||||||||||||||||||||||||||||||||||.||.:|::|.:...||:|..:...:..
Zfish   130 TKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWVPKTRTDEDGNVYTSDNEDAEKRDEDE 194

  Fly   320 KLSTEAFDPGNQLIKSELGKAEKEVDSSGDQKLDLDREPHNLVAMRGLAPYATPPGAHPMHAAYS 384
            ::..|..|       :|..:.:::.|...|.|                   :||.|:        
Zfish   195 EIDLENID-------TEDIEDKQDCDYQDDDK-------------------STPKGS-------- 225

  Fly   385 SYAQSHNTHTHPHPQQMQHHQQQQQQQQNQQQLQHHQMDQPYYHPGGYGQEESGEFAAQKNPLSR 449
                        ..::....:.:::..::::|::....::         ||.|...:        
Zfish   226 ------------DSEEYDDARAEKRIIEDEEQIKKSPAEE---------QEPSNNIS-------- 261

  Fly   450 DCGIPVPASKPKIWSVADTAACKTP-PPTAAYLGQNFYPPSSADQQLPHQPL----------QQH 503
                  ||.||||||:|:.|.  || .|...::.:|      .|.|....||          ..|
Zfish   262 ------PALKPKIWSLAEIAT--TPDSPKKTWIQRN------CDAQTVRNPLHVQNWTKMAISAH 312

  Fly   504 Q----QQQLQQLQQQQQHHHHPHHHHPHHSM 530
            |    ...|....|...:.|..|.....||:
Zfish   313 QMAFTSHYLGLKHQSIANIHVKHAEQRTHSL 343

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
caupNP_524046.2 Homeobox_KN 245..283 CDD:428673 36/37 (97%)
IRO 455..472 CDD:214716 10/16 (63%)
irx3bNP_998265.2 Homeobox_KN 120..158 CDD:428673 36/37 (97%)
Merozoite_SPAM 160..>268 CDD:429310 32/176 (18%)
IRO 261..278 CDD:214716 10/32 (31%)

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