DRSC/TRiP Functional Genomics Resources

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Protein Alignment caup and tgif1

DIOPT Version :9

Sequence 1:NP_524046.2 Gene:caup / 39440 FlyBaseID:FBgn0015919 Length:693 Species:Drosophila melanogaster
Sequence 2:NP_955861.1 Gene:tgif1 / 321756 ZFINID:ZDB-GENE-030131-475 Length:273 Species:Danio rerio


Alignment Length:323 Identity:78/323 - (24%)
Similarity:104/323 - (32%) Gaps:136/323 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly   229 RRKNATRESTATLKAWLSEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWE 293
            ||.|..:||...|:.||.:|:.|.||::.||.:|:..|.::..||..||.||||||..|      
Zfish    39 RRGNLPKESVQILRDWLYQHRYNAYPSEQEKALLSKQTHLSTLQVCNWFINARRRLLPE------ 97

  Fly   294 PKNKTEDDDDGMMSDDEKEKDAGDGGKLSTEAFDPGNQLIKSELGKAEKEV--DSSGDQKLDL-- 354
                       |:..|.|               || ||...|..|....|:  |:|...|..|  
Zfish    98 -----------MLRKDGK---------------DP-NQFTISRRGSKGGEMLSDNSQSPKHGLLA 135

  Fly   355 ---DR------EPH--------NLVAMRGLAPYATPPGAHPM--------HAAYSSYAQSHNTHT 394
               ||      .||        |....:.|:| .|||...|:        |...::..|..||.|
Zfish   136 NGEDRNSYEPGSPHPTSNTPTSNGYPKKALSP-KTPPSPGPVLPRPSVICHTTITTATQGINTTT 199

  Fly   395 HPHPQQMQHHQQQQQQQQNQQQLQHHQMDQPYYHPGGYGQEESGEFAAQKNPLSRDCGIPVPASK 459
            .                                    .|.|.:.|.     ||:           
Zfish   200 R------------------------------------LGVEGATEL-----PLT----------- 212

  Fly   460 PKIWSVADTAACK-------------TPPPTAAYLGQNFYPPSSADQQLPHQPLQQHQQQQLQ 509
                ..|....|:             |||||...|.|:|    |..|.|....|::..:.:||
Zfish   213 ----DAASLFGCRGEGNVSPQSGLFNTPPPTPPDLTQDF----SGFQLLVDVALKRAAEMELQ 267

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
caupNP_524046.2 Homeobox_KN 244..283 CDD:283551 17/38 (45%)
IRO 455..472 CDD:214716 1/16 (6%)
tgif1NP_955861.1 Homeobox_KN 54..93 CDD:283551 17/38 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0773
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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