Protein Alignment caup and Irx1

DIOPT Version :9

• Sequence 1: NP_524046.2
• Gene: caup / 39440
• FlyBaseID: FBgn0015919
• Length: 693
• Species: Drosophila melanogaster
• Sequence 2: NP_001100801.1
• Gene: Irx1 / 306659
• RGDID: 1309060
• Length: 480
• Species: Rattus norvegicus
• Alignment Length: 575
• Identity: 165/575 - (28%)
• Similarity: 240/575 - (41%)
• Gaps: 205/575 - (35%)

  Fly    86 GGDVPVGLSSAAQDLPSRGSCCENGRPIITDPVSGQTVCSCQYDPARLAIGGYSRMALPSGGVGV 150
            ||:.|..|::||    :..:...:|||                        |.:.:...:|...|
  Rat    21 GGERPGMLAAAA----AAAAAASSGRP------------------------GTAELGAGAGAAAV 57

  Fly   151 ----GVY--GGPYPSNEQN-----PYPSIGVDNSAFYAPLSNPYGIKDTSPSTEMSAWTSASLQS 204
                |:|  .||| :...|     ||.:    :.:.::.:.:.|.:|| :|....:.:.:   .:
  Rat    58 TSVLGMYAAAGPY-AGAPNYSAFLPYAA----DLSLFSQMGSQYELKD-NPGVHPATFAA---HT 113

  Fly   205 TTGYYSYDPTLAAYGYGPNYDLAARRKNATRESTATLKAWLSEHKKNPYPTKGEKIMLAIITKMT 269
            |..||.|    ..:.||.    ..|.||||||||:||||||:||:||||||||||||||||||||
  Rat   114 TPAYYPY----GQFQYGD----PGRPKNATRESTSTLKAWLNEHRKNPYPTKGEKIMLAIITKMT 170

  Fly   270 LTQVSTWFANARRRLKKENKMTWEPKNKTEDDDDGMMSDDEKEKD---AGDGGKLSTEAFDPGNQ 331
            ||||||||||||||||||||:||..::|  |.:||.:...:.|.|   |.|..::..|:.|. :|
  Rat   171 LTQVSTWFANARRRLKKENKVTWGARSK--DQEDGALFGSDTEGDPEKAEDDEEIDLESIDI-DQ 232

  Fly   332 LIKSELGKAEKEVDSSGDQKLDLDREPHNLVAMRGLAPYATPPG-----AHPMHAAYSSYAQSHN 391
            :       .|::.|.|.:.:.|....|...||         ||.     :.|:.||.:..:|
  Rat   233 I-------DERDGDQSNEDEEDKVEAPRARVA---------PPAPARDQSSPLSAAETLKSQ--- 278

  Fly   392 THTHPHPQQMQHHQQQQQQQQNQQQLQHHQMDQPYYHPGGYGQEESGEFAAQ-KNPLSRDCGIP- 454
                                           |.|.    |..:|.|...:.: .:|.:...|:.
  Rat   279 -------------------------------DSPL----GLAKEVSEPGSTRLLSPGAAAVGLQG 308

  Fly   455 VPASKPKIWSVADTAAC------KTPPPTAAYLGQNFYPPSSADQQLPHQPLQQHQQQQLQQLQQ 513
            .|.|||||||:|:||..      .:|||.:::...: .|||.:       |||
  Rat   309 APHSKPKIWSLAETATSPDGAPKASPPPPSSHASAH-GPPSGS-------PLQ------------ 353

  Fly   514 QQQHHHHP-----HHHHPHH-----------SMELGSPLSMMSSYAGGSPYS------------- 549
                  ||     |..:..|           .:..||.|:|.|.....:|::
  Rat   354 ------HPAFLPSHGLYTCHIGKFSNWTNGAFLAQGSLLNMRSFLGVSAPHAAPHGPHVTAPPPP 412

  Fly   550 RIPTAYTEAMGMHLPSSSSSSSSTGKLPPTHIHPAPQRVGFPE----IQPDTPPQ 600
            ::|......: :|...:|:|||           ||     .||    .:||:|||
  Rat   413 QLPVQVATGV-LHGEKASASSS-----------PA-----LPERDLVTRPDSPPQ 450

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
caup	NP_524046.2	Homeobox_KN	244..283	CDD:283551	36/38 (95%)
		IRO	455..472	CDD:214716	11/22 (50%)
Irx1	NP_001100801.1	Homeobox_KN	145..184	CDD:283551	36/38 (95%)
		SDA1	<194..>252	CDD:283052	15/67 (22%)
		IRO	309..326	CDD:214716	11/16 (69%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG0773
Hieranoid	1	1.000	-	-
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D351833at33208
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR11211
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	1	0.960	-	-
	7	6.880