DRSC/TRiP Functional Genomics Resources

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Protein Alignment caup and Meis3

DIOPT Version :10

Sequence 1:NP_524046.2 Gene:caup / 39440 FlyBaseID:FBgn0015919 Length:693 Species:Drosophila melanogaster
Sequence 2:XP_036008636.1 Gene:Meis3 / 17537 MGIID:108519 Length:400 Species:Mus musculus


Alignment Length:204 Identity:59/204 - (28%)
Similarity:86/204 - (42%) Gaps:56/204 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    87 GDVPVGLSSAAQDLPSRGSCCENGRPIITDPVSGQTVCSCQYDPARLAIGGYSRMALPSGGVGVG 151
            |.:|:.|....:|    |||.|:    :.|     ...||...|.:...  :.|....||.|.:|
Mouse   192 GKMPIDLVIEDRD----GSCRED----LED-----YAASCPSLPDQNTT--WIRDHEDSGSVHLG 241

  Fly   152 VYGGPYPSNEQNPYPSIGVDNSAFYAPLSNPYGIKDTSPSTEMSAWTSASLQSTTGYYSYDPTLA 216
            .   |.||:  ....|...|||:     ....|: |||.::..||                    
Mouse   242 T---PGPSS--GGLASQSGDNSS-----DQGDGL-DTSVASPSSA-------------------- 275

  Fly   217 AYGYGPNYDL-AARRKNATR-----ESTATLKAWLSEHKKNPYPTKGEKIMLAIITKMTLTQVST 275
                |.:.|| ..||:|..|     .:|..::|||.:|..:|||::.:|..||..|.:|:.||:.
Mouse   276 ----GEDEDLDLERRRNKKRGIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNN 336

  Fly   276 WFANARRRL 284
            ||.|||||:
Mouse   337 WFINARRRI 345

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
caupNP_524046.2 Homeobox_KN 245..283 CDD:428673 17/37 (46%)
IRO 455..472 CDD:214716
Meis3XP_036008636.1 Meis_PKNOX_N 99..205 CDD:465140 4/16 (25%)
Homeobox_KN 306..344 CDD:428673 17/37 (46%)
Blue background indicates that the domain is not in the aligned region.

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