DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment caup and irx-1

DIOPT Version :9

Sequence 1:NP_524046.2 Gene:caup / 39440 FlyBaseID:FBgn0015919 Length:693 Species:Drosophila melanogaster
Sequence 2:NP_492533.2 Gene:irx-1 / 172789 WormBaseID:WBGene00007984 Length:377 Species:Caenorhabditis elegans


Alignment Length:583 Identity:141/583 - (24%)
Similarity:200/583 - (34%) Gaps:225/583 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 PTANQLTTANTDSQSGHGGGSPLSGTNEASLSPSGGSTATGLTAGPLSPGAVSQSSHHAGHKGLS 77
            |.|||:.....              |...:.:|:..::|.....|.|.|..:.|...|.....:.
 Worm     3 PIANQVKMEEP--------------TTPQTTTPAPPTSAPDALRGILPPNLLGQFHFHPAMAQVL 53

  Fly    78 TSPAEDVVGGDVPVGLSSAAQDLPSRGSCCENGRPIITDPVSGQTVCSCQYDPARLAIGGYSRMA 142
            .:.|:          .::|||.....|.   .|.|:....:           ||.|.        
 Worm    54 AAQAQ----------AAAAAQQATLAGF---PGVPMFPHGI-----------PADLK-------- 86

  Fly   143 LPSGGVGVGVYGGPYPSNEQNPYPSIGVDNSAFYAPLSNPYGIKDTSPSTEMSAWTSASLQSTTG 207
             |...:|    |||      .|.|....|....|    :|||:.                     
 Worm    87 -PEMLLG----GGP------GPMPMFFSDAHRLY----HPYGLD--------------------- 115

  Fly   208 YYSYDPTLAAYGYGPNYDLAARRKNATRESTATLKAWLSEHKKNPYPTKGEKIMLAIITKMTLTQ 272
                               ..:::|||||:||.||.||..|:|||||:|.:|:|||:.|.|||||
 Worm   116 -------------------GIKKRNATREATAPLKDWLHSHRKNPYPSKADKVMLAVGTGMTLTQ 161

  Fly   273 VSTWFANARRRLKKENKMTWEPKNKTEDDDDGMMSDDEKEKDAGDGGKLSTEAFDPGNQLIKSEL 337
            ||||||||||||||||||||.|:|:..|..|    |||.:.|            |..|:...|..
 Worm   162 VSTWFANARRRLKKENKMTWSPQNRRGDGCD----DDEDDDD------------DDMNRPSSSTS 210

  Fly   338 GKAEKEVDSSGDQKLDLDREPHNLVAMRGLAPYATPPGAHPMHAAYSSYAQSHNTHTHPHPQQMQ 402
            ..:|::.:|       |..:||          .|:|.                            
 Worm   211 INSERKGES-------LFGKPH----------LASPT---------------------------- 230

  Fly   403 HHQQQQQQQQNQQQLQHHQMDQPYYHPGGYGQEESGEFAAQK----NPLSRDCGIPVPASKPKIW 463
                                      |.| |...|.|....|    :|:..| ....|..|||:|
 Worm   231 --------------------------PSG-GSGGSDELTTPKKELVSPIPND-DSESPKRKPKMW 267

  Fly   464 SVADT-----AACKTPPPTAAYLGQNFYPPSSADQQLPHQPLQQHQQQQLQQLQQQQQHHHHPHH 523
            |:||.     ::.|..||             |:|:.|....|.|:..::..::..:.......|.
 Worm   268 SIADVTSDDDSSKKDSPP-------------SSDENLLTGSLFQNAMKKQMEVMARLDPTLFRHT 319

  Fly   524 HHPHHSMELGSPLSMMSSYAGGSPYSRIPTAYTEAMGMH------LPSSSSSSSSTGKLPPTH 580
            .||.....|....:.....|..:|.:..|   .|| |::      .||.:||.:|:   |.:|
 Worm   320 MHPFMFQLLAQQAAQGQQLALLAPQTTPP---NEA-GLNSQAETSTPSPASSPTSS---PRSH 375

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
caupNP_524046.2 Homeobox_KN 244..283 CDD:283551 28/38 (74%)
IRO 455..472 CDD:214716 8/21 (38%)
irx-1NP_492533.2 Homeobox_KN 133..172 CDD:283551 28/38 (74%)
IRO 259..>273 CDD:214716 8/13 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160166416
Domainoid 1 1.000 71 1.000 Domainoid score I6142
eggNOG 1 0.900 - - E1_KOG0773
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001669
OrthoInspector 1 1.000 - - otm14806
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11211
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.930

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