DRSC/TRiP Functional Genomics Resources

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Protein Alignment caup and meis1b

DIOPT Version :10

Sequence 1:NP_524046.2 Gene:caup / 39440 FlyBaseID:FBgn0015919 Length:693 Species:Drosophila melanogaster
Sequence 2:XP_073775304.1 Gene:meis1b / 170446 ZFINID:ZDB-GENE-020122-1 Length:463 Species:Danio rerio


Alignment Length:399 Identity:76/399 - (19%)
Similarity:126/399 - (31%) Gaps:142/399 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 KGLSTSPAEDVVGGDVPVGLSSAAQDLPSRGSCCENGRPIITDPVSGQTVCSCQYDPARLAIGGY 138
            :|.|.|.:|::.....|:..:|..:|.....|....|.|   .|.||                  
Zfish   189 EGGSKSDSEEITRSSGPLDQTSWNRDHDDTASTRSGGTP---GPSSG------------------ 232

  Fly   139 SRMALPSGGVGVGVYGGPYPSNEQNPYPSIGVDNSAFYAPLSNPYGIKDTSPSTEMSAWTSASLQ 203
                           |....|.:.:.....|:|||     :::|....|..|..|          
Zfish   233 ---------------GHTSHSGDNSSEQGDGLDNS-----VASPSTGDDDDPDKE---------- 267

  Fly   204 STTGYYSYDPTLAAYGYGPNYDLAARRKNATR-----ESTATLKAWLSEHKKNPYPTKGEKIMLA 263
                                     :::|..|     .:|..::|||.:|..:|||::.:|..||
Zfish   268 -------------------------KKRNKKRGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLA 307

  Fly   264 IITKMTLTQVSTWFANARRRLKKENKMTWEPKNKTEDDDDGMMSDDEKEKDAGDGGKLSTEAFDP 328
            ..|.:|:.||:.||.|||||:.:.                 |:  |:..:....|...:.:....
Zfish   308 QDTGLTILQVNNWFINARRRIVQP-----------------MI--DQSNRAVSQGAPYNPDGQPM 353

  Fly   329 GNQLIKSELGKAEKEVDSSGDQKLDLDREPHNLVAMRGLAPYATPPGAHPMHAAYSSYAQSHNTH 393
            |..::             .|.|.:.:  .|..|.:|.|  .|.:..|...|......|:.|...|
Zfish   354 GGFVM-------------DGQQHMGI--RPPGLQSMPG--DYLSHSGPVAMAMGQPGYSASQMPH 401

  Fly   394 THPHPQQMQHHQQQQQQQQNQQQLQHHQMDQPYYHPGGYGQEESGEFAAQKNPLSRDCGIPVPAS 458
               ||.|::|....:.                 |.||..............:|     .:|:.||
Zfish   402 ---HPAQLRHGPPMRS-----------------YIPGHLHHPAMLMHGGPPHP-----AMPMSAS 441

  Fly   459 KPKIWSVAD 467
            .|.:::..|
Zfish   442 SPPMFNPGD 450

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
caupNP_524046.2 Homeobox_KN 245..283 CDD:428673 17/37 (46%)
IRO 455..472 CDD:214716 4/13 (31%)
meis1bXP_073775304.1 None

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