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Protein Alignment caup and meis1b

DIOPT Version :9

Sequence 1:	NP_524046.2	Gene:	caup / 39440	FlyBaseID:	FBgn0015919	Length:	693	Species:	Drosophila melanogaster
Sequence 2:	NP_571968.1	Gene:	meis1b / 170446	ZFINID:	ZDB-GENE-020122-1	Length:	388	Species:	Danio rerio

Alignment Length:	268	Identity:	55/268 - (20%)
Similarity:	91/268 - (33%)	Gaps:	88/268 - (32%)

- Green bases have known domain annotations that are detailed below.

  Fly    74 KGLSTSPAEDVVGGDVPVGLSSAAQDLPSRGSCCENGRPIITDPVSGQTVCSCQYDPARLAIGGY 138
            :|.|.|.:|::.....|:..:|..:|.....|....|.|   .|.||
Zfish   189 EGGSKSDSEEITRSSGPLDQTSWNRDHDDTASTRSGGTP---GPSSG------------------ 232

  Fly   139 SRMALPSGGVGVGVYGGPYPSNEQNPYPSIGVDNSAFYAPLSNPYGIKDTSPSTEMSAWTSASLQ 203
                           |....|.:.:.....|:|||     :::|....|..|..|
Zfish   233 ---------------GHTSHSGDNSSEQGDGLDNS-----VASPSTGDDDDPDKE---------- 267

  Fly   204 STTGYYSYDPTLAAYGYGPNYDLAARRKNATR-----ESTATLKAWLSEHKKNPYPTKGEKIMLA 263
                                     :::|..|     .:|..::|||.:|..:|||::.:|..||
Zfish   268 -------------------------KKRNKKRGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLA 307

  Fly   264 IITKMTLTQVSTWFANARRR-----LKKENKMTWE--PKNKTEDDDDGMMSDDEKEKDAGDGGKL 321
            ..|.:|:.||:.||.|||||     :.:.|:...:  |.|.......|.:.|.::.......|.:
Zfish   308 QDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQGAPYNPDGQPMGGFVMDGQQHMGIRPPGPM 372

  Fly   322 STEAFDPG 329
            |....:.|
Zfish   373 SGMGMNMG 380

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.