DRSC/TRiP Functional Genomics Resources

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Protein Alignment caup and pknox1.2

DIOPT Version :9

Sequence 1:NP_524046.2 Gene:caup / 39440 FlyBaseID:FBgn0015919 Length:693 Species:Drosophila melanogaster
Sequence 2:XP_005171069.1 Gene:pknox1.2 / 170445 ZFINID:ZDB-GENE-020123-1 Length:445 Species:Danio rerio


Alignment Length:276 Identity:66/276 - (23%)
Similarity:105/276 - (38%) Gaps:74/276 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   154 GGPY---PSNEQNPYPSIGVDNSAFYAPLSNPYGIKDTSPSTEMSAWTSASL---QSTTGYYSYD 212
            |.||   |:..|||:..           ..:|.||...:.:.:....|..::   |..||...|.
Zfish   176 GSPYSPSPTQPQNPFTG-----------AMSPQGIVVPASALQQGNVTVTAVNPTQMVTGGTVYQ 229

  Fly   213 PTLAAYGYGP----------------------NYDLA----------ARRKNATRESTATLKAWL 245
            |.......|.                      |.||:          |:|....:.:|..:::||
Zfish   230 PVTVVTPQGQVVTQTLSPGTVRIQNSQLQLQLNQDLSFFSQEDGSSKAKRGILPKHATNVMRSWL 294

  Fly   246 SEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR-----LKKENKMTWEPKNKTED----- 300
            .:|..:||||:.||..:|:.|.:||.||:.||.|||||     |...:..|.:.|.||..     
Zfish   295 FQHIGHPYPTEDEKKQIALQTNLTLLQVNNWFINARRRILQPMLDASSSDTPKSKKKTPQTRPLQ 359

  Fly   301 ---DDDGMMSDDEKEKDAGDGGKLSTEAFDPGNQLIKSE----------LGKAEKEVDSSGDQKL 352
               .:....|..:::....||..::....:.|.|.:.|:          :| ...|.|...|.:.
Zfish   360 RFWPNSLASSVSQQQVTMEDGTTVTVGVGEDGLQTLSSDGATLAMQQVMMG-GHSEDDDDEDDEE 423

  Fly   353 DLDREP-HNLVAMRGL 367
            |.|.:| |:.::..||
Zfish   424 DEDTDPSHSDMSRLGL 439

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
caupNP_524046.2 Homeobox_KN 244..283 CDD:283551 20/38 (53%)
IRO 455..472 CDD:214716
pknox1.2XP_005171069.1 Meis_PKNOX_N 91..175 CDD:293102
Homeobox_KN 293..332 CDD:283551 20/38 (53%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0773
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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