DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment caup and Irx1

DIOPT Version :9

Sequence 1:NP_524046.2 Gene:caup / 39440 FlyBaseID:FBgn0015919 Length:693 Species:Drosophila melanogaster
Sequence 2:NP_034703.2 Gene:Irx1 / 16371 MGIID:1197515 Length:480 Species:Mus musculus


Alignment Length:563 Identity:166/563 - (29%)
Similarity:237/563 - (42%) Gaps:181/563 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 GGDVPVGLSSAAQDLPSRGSCCENGRPIITDPVSGQTVCSCQYDPARLAIGGYSRMALPSGGVGV 150
            ||:.|..|::||    :..:...:|||                        |.:.:...:|...|
Mouse    21 GGERPGVLAAAA----AAAAAASSGRP------------------------GTAELGAGAGAAAV 57

  Fly   151 ----GVY--GGPYPSNEQN-----PYPSIGVDNSAFYAPLSNPYGIKDTSPSTEMSAWTSASLQS 204
                |:|  .||| :...|     ||.:    :.:.::.:.:.|.:|| :|....:.:.:   .:
Mouse    58 TSVLGMYAAAGPY-AGAPNYSAFLPYAA----DLSLFSQMGSQYELKD-NPGVHPATFAA---HT 113

  Fly   205 TTGYYSYDPTLAAYGYGPNYDLAARRKNATRESTATLKAWLSEHKKNPYPTKGEKIMLAIITKMT 269
            |..||.|    ..:.||.    ..|.||||||||:||||||:||:||||||||||||||||||||
Mouse   114 TPAYYPY----GQFQYGD----PGRPKNATRESTSTLKAWLNEHRKNPYPTKGEKIMLAIITKMT 170

  Fly   270 LTQVSTWFANARRRLKKENKMTWEPKNKTEDDDDGMMSDDEKEKD---AGDGGKLSTEAFDPGNQ 331
            ||||||||||||||||||||:||..::|  |.:||.:...:.|.|   |.|..::..|:.|. :|
Mouse   171 LTQVSTWFANARRRLKKENKVTWGARSK--DQEDGALFGSDTEGDPEKAEDDEEIDLESIDI-DQ 232

  Fly   332 LIKSELGKAEKEVDSSGDQKLDLDREPHNLVAMRGLAPYATPPGAHPMHAAYSSYAQSHNTHTHP 396
            :       .|::.|.|.:.:.|....|...||    .|.:....:.|:.||.:..:|        
Mouse   233 I-------DERDGDQSNEDEEDKAEAPRARVA----PPASARDQSSPLSAAETLKSQ-------- 278

  Fly   397 HPQQMQHHQQQQQQQQNQQQLQHHQMDQPYYHPGGYGQEESGEFAAQ-KNPLSRDCGIP-VPASK 459
                                      |.|.    |..:|.|...:.: .:|.:...|:. .|.||
Mouse   279 --------------------------DSPL----GLVKEVSEPGSTRLLSPGAAAVGLQGAPHSK 313

  Fly   460 PKIWSVADTAAC------KTPPPTAAYLGQNFYPPSSADQQLPHQPLQQHQQQQLQQLQQQQQHH 518
            |||||:|:||..      .:|||.:::...: .|||.:       |||                 
Mouse   314 PKIWSLAETATSPDGAPKASPPPPSSHASAH-GPPSGS-------PLQ----------------- 353

  Fly   519 HHP-----HHHHPHH-----------SMELGSPLSMMSSYAGGSPYSRIPTAYTEAMGMHL---- 563
             ||     |..:..|           .:..||.|:|.|.....:|::       ...|.||    
Mouse   354 -HPAFLPSHGLYTCHIGKFSNWTNGAFLAQGSLLNMRSFLGVSAPHA-------APHGPHLTAPP 410

  Fly   564 PSSSSSSSSTGKLPPTHIHPAPQR--VGFPE----IQPDTPPQ 600
            |.......:||.|   |...|..|  ...||    .:||:|||
Mouse   411 PPQPPVQVATGVL---HGEKASARSSPALPERDLVTRPDSPPQ 450

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
caupNP_524046.2 Homeobox_KN 244..283 CDD:283551 36/38 (95%)
IRO 455..472 CDD:214716 11/22 (50%)
Irx1NP_034703.2 Homeobox_KN 145..184 CDD:283551 36/38 (95%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 190..285 29/146 (20%)
SDA1 <194..>252 CDD:283052 15/67 (22%)
IRO 309..326 CDD:214716 11/16 (69%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 318..354 13/61 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 401..480 17/53 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0773
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D351833at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11211
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
76.880

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