DRSC/TRiP Functional Genomics Resources

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Protein Alignment caup and meis2

DIOPT Version :10

Sequence 1:NP_524046.2 Gene:caup / 39440 FlyBaseID:FBgn0015919 Length:693 Species:Drosophila melanogaster
Sequence 2:XP_012823255.1 Gene:meis2 / 100036664 XenbaseID:XB-GENE-487675 Length:409 Species:Xenopus tropicalis


Alignment Length:79 Identity:30/79 - (37%)
Similarity:47/79 - (59%) Gaps:6/79 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly   212 DPTLAAYGYG----PNYDLAARRKNATRESTAT--LKAWLSEHKKNPYPTKGEKIMLAIITKMTL 270
            |.::|:.|.|    |:.|...::|.......||  ::|||.:|..:|||::.:|..||..|.:|:
 Frog   264 DNSVASPGTGDDDDPDKDKKRQKKRGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTI 328

  Fly   271 TQVSTWFANARRRL 284
            .||:.||.|||||:
 Frog   329 LQVNNWFINARRRI 342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
caupNP_524046.2 Homeobox_KN 245..283 CDD:428673 17/37 (46%)
IRO 455..472 CDD:214716
meis2XP_012823255.1 Meis_PKNOX_N 118..202 CDD:465140
Homeobox_KN 303..341 CDD:428673 17/37 (46%)
Blue background indicates that the domain is not in the aligned region.

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