DRSC/TRiP Functional Genomics Resources

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Protein Alignment ara and pknox2

DIOPT Version :9

Sequence 1:NP_524045.2 Gene:ara / 39439 FlyBaseID:FBgn0015904 Length:717 Species:Drosophila melanogaster
Sequence 2:NP_705940.1 Gene:pknox2 / 386959 ZFINID:ZDB-GENE-031118-112 Length:474 Species:Danio rerio


Alignment Length:279 Identity:68/279 - (24%)
Similarity:108/279 - (38%) Gaps:95/279 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   176 GTPYPSTDQNPYQ-SIGVDSSAFYSPLSNPYGLKDT--------GAGPEMG---AWTSAGLQPTT 228
            |.||     :|.| |:|:......|...:...:..|        .|||...   :.|:...|..:
Zfish   180 GGPY-----SPSQTSLGLQQDLLQSSSPSLTSVSSTVNSSGIVVPAGPLQQNNISMTTINSQVVS 239

  Fly   229 GYYSYDP---MSAYGGLLVSNSSYG--------ASYDLAA-------RRKN----ATRESTATLK 271
            |...|.|   :::.|.:|......|        .:.||::       :.||    ..:.:|..::
Zfish   240 GGTLYQPVAMVTSQGQVLTQGLPQGTIQIQNNQVNLDLSSLLDGDDKKSKNKRGVLPKHATNIMR 304

  Fly   272 AWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRL---------------KKENKMTW 321
            :||.:|..:||||:.||..:|..|.:||.||:.||.|||||:               .|:.|...
Zfish   305 SWLFQHLMHPYPTEDEKRQIAAQTNLTLLQVNNWFINARRRILQPMLDASNPDPAPKAKKMKSQH 369

  Fly   322 EPKNR---------------TDDDDDALVSDDEKDKEDLEPSKGSQGSVSLA------------- 358
            .|..|               |::.|::|..|      .|:|.  |..|.:||             
Zfish   370 RPTQRFWPDSIVAGVLQTHGTNNSDNSLGMD------GLQPL--SSDSATLAMQQAMLGGTDDSM 426

  Fly   359 -----KDETKEEEDAIDED 372
                 :||.:||::.:|||
Zfish   427 DGTEEEDEEEEEDEGLDED 445

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
araNP_524045.2 Homeobox_KN 273..312 CDD:283551 20/38 (53%)
pknox2NP_705940.1 Meis_PKNOX_N 95..178 CDD:293102
Homeobox_KN 306..345 CDD:283551 20/38 (53%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0773
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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