Protein Alignment ara and Meis3

DIOPT Version :10

• Sequence 1: NP_524045.2
• Gene: ara / 39439
• FlyBaseID: FBgn0015904
• Length: 717
• Species: Drosophila melanogaster
• Sequence 2: XP_038937577.1
• Gene: Meis3 / 361514
• RGDID: 1308532
• Length: 443
• Species: Rattus norvegicus
• Alignment Length: 239
• Identity: 68/239 - (28%)
• Similarity: 91/239 - (38%)
• Gaps: 79/239 - (33%)

  Fly   119 TTPTAGGAGGGGS--------------------CCENGRPIMTDPVSGQTVCSCQYDSARLALSS 163
            :||.....||..|                    |.:...||  |.|.......|:.|....|.|.
  Rat   185 STPALAPPGGPPSTPLPSQVHDLCDNFCHRYITCLKGKMPI--DLVIEDRDGGCREDLEDYAASC 247

  Fly   164 YSRLP------------AASVGVYGTPYPSTDQNPYQSIGVDSSAFYSPLSNPYGLKDTGAGPEM 216
            .| ||            :.||.: |||.||:.....|| |.:||.
  Rat   248 PS-LPDQNTTWIRDHEDSGSVHL-GTPGPSSGGLASQS-GDNSSD-------------------- 289

  Fly   217 GAWTSA---GLQPTTGYYSYDPMSAYGGL---LVSNSSYGASYDL-AARRKNATR-----ESTAT 269
            ..|..|   |:.|:.|          .||   :.|.||.|...|| ..||:|..|     .:|..
  Rat   290 QVWCLAVQWGMCPSPG----------DGLDTSVASPSSAGEDEDLDLERRRNKKRGIFPKVATNI 344

  Fly   270 LKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRL 313
            ::|||.:|..:|||::.:|..||..|.:|:.||:.||.|||||:
  Rat   345 MRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRI 388

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
ara	NP_524045.2	COG5576	<237..>318	CDD:227863	34/86 (40%)
		Homeobox_KN	274..312	CDD:428673	17/37 (46%)
Meis3	XP_038937577.1	Meis_PKNOX_N	99..234	CDD:465140	10/50 (20%)
		Homeobox_KN	349..387	CDD:428673	17/37 (46%)