DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ara and tgif1

DIOPT Version :9

Sequence 1:NP_524045.2 Gene:ara / 39439 FlyBaseID:FBgn0015904 Length:717 Species:Drosophila melanogaster
Sequence 2:NP_955861.1 Gene:tgif1 / 321756 ZFINID:ZDB-GENE-030131-475 Length:273 Species:Danio rerio


Alignment Length:265 Identity:66/265 - (24%)
Similarity:94/265 - (35%) Gaps:84/265 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   247 SSYGASYDLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARR 311
            ||.|.......||.|..:||...|:.||.:|:.|.||::.||.:|:..|.::..||..||.||||
Zfish    28 SSNGGVSGKRKRRGNLPKESVQILRDWLYQHRYNAYPSEQEKALLSKQTHLSTLQVCNWFINARR 92

  Fly   312 RLKKENKMTWEPKNRTDDDDDALVSDDEKDKEDLEPS-KGSQGSVSLAKDETKEEED--AIDEDQ 373
            ||..|                 ::..|.||......| :||:|...|:.:....:..  |..||:
Zfish    93 RLLPE-----------------MLRKDGKDPNQFTISRRGSKGGEMLSDNSQSPKHGLLANGEDR 140

  Fly   374 KCLGQANILRAGFGYPSAGS-GSGGYPGGGGSSSGHPGGYHPYHHQHPAYYQAGQQGGMLP---- 433
                  |....|..:|::.: .|.|||....|....|                 ..|.:||    
Zfish   141 ------NSYEPGSPHPTSNTPTSNGYPKKALSPKTPP-----------------SPGPVLPRPSV 182

  Fly   434 ---------FHGENSKLQTDLGDPKNQLGRDCGVPIPATKPKIWSLADTVGCK------------ 477
                     ..|.|:         ..:||.:....:|.|     ..|...||:            
Zfish   183 ICHTTITTATQGINT---------TTRLGVEGATELPLT-----DAASLFGCRGEGNVSPQSGLF 233

  Fly   478 -TPPP 481
             ||||
Zfish   234 NTPPP 238

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
araNP_524045.2 Homeobox_KN 273..312 CDD:283551 17/38 (45%)
tgif1NP_955861.1 Homeobox_KN 54..93 CDD:283551 17/38 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0773
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.