DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4069 and hcfc1b

DIOPT Version :9

Sequence 1:NP_648590.1 Gene:CG4069 / 39437 FlyBaseID:FBgn0036301 Length:509 Species:Drosophila melanogaster
Sequence 2:NP_001122009.1 Gene:hcfc1b / 565206 ZFINID:ZDB-GENE-030131-2411 Length:1993 Species:Danio rerio


Alignment Length:429 Identity:97/429 - (22%)
Similarity:155/429 - (36%) Gaps:106/429 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 PPPTPRSNFTLVCHPEKEELIMFGGELYTGTKTTVYNDLFFYNTKTVEWRQLKSPSGPTPRSGHQ 128
            |.|.||.....|.  .||.:::|||    |.:..| ::|..|||.|.:| .:.:..|..| .|..
Zfish    22 PVPRPRHGHRAVA--IKELMVVFGG----GNEGIV-DELHVYNTATNQW-FIPAVRGDIP-PGCA 77

  Fly   129 MVAVASNGGELWMFGGEHASPSQLQFHHY-KDLWKFALKSRKWERI---AAPNG--PSPRSGHRM 187
            ......:|..|.:|||      .:::..| .||::......:|:|:   |..||  |.||.||..
Zfish    78 AYGFVCDGTRLLVFGG------MVEYGKYSNDLYELQASRWEWKRLKPKAPKNGPPPCPRLGHSF 136

  Fly   188 TVSKKRLFIFGGFHDN-----NQSYHYFNDVHIFSLESYQWLKAEIGG-------AIVPSPRSGC 240
            ::...:.::|||..::     |....|.||::...|..    .:.:.|       .::|.||...
Zfish   137 SLVGNKCYLFGGLANDSEDPKNNIPRYLNDLYTLELRP----GSNVAGWDIPITYGVLPPPRESH 197

  Fly   241 CIA-----ASPEGKIYVWGGYSRAAMKKEADRGVTHTDMFVLSQDKNAGDADNKYKWAPVKPGGY 300
            ...     .|.:.::.::||.|          |....|::.|..|        ...|......|.
Zfish   198 TAVVYTEKTSKKSRLIIYGGMS----------GCRLGDLWTLDID--------TLTWNKPAISGA 244

  Fly   301 KPKPRSSVGCTVAANGKAYTFGGVMDVDEDDEDV-----HGQFGDDLLAFDLTSQTWRLQEIQTK 360
            .|.|||....|...| |.:.|||.:.:..||..|     ..:..:.|...:|.|.:|....:.|.
Zfish   245 APLPRSLHSATTITN-KMFVFGGWVPLVMDDVKVATHEKEWKCTNTLACLNLDSMSWETILMDTL 308

  Fly   361 SSSAEK-------------------KDSEES--------KDVEMSAVDKP--------VTTTTDG 390
            ..:..:                   :|....        ||:.....|:|        |...|:.
Zfish   309 EDNIPRARAGHCSVAINNRLYVWSGRDGYRKAWNNQVCCKDLWYLETDRPQPPSRVQLVRANTNS 373

  Fly   391 IFTVTVGGPSTSTTPFVS----KIPSLFAKPKPTNVPSP 425
            : .|:.|...|:.|..:.    .||:..|...||..|.|
Zfish   374 L-EVSWGAVPTADTYLLQLQKYDIPAATAATSPTVNPMP 411

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4069NP_648590.1 KELCH repeat 69..120 CDD:276965 15/50 (30%)
Kelch_3 80..132 CDD:290151 16/51 (31%)
KELCH repeat 124..179 CDD:276965 14/60 (23%)
Kelch_3 136..189 CDD:290151 18/58 (31%)
Kelch_3 191..244 CDD:290151 12/69 (17%)
Kelch_2 237..297 CDD:284956 10/64 (16%)
KELCH repeat 305..353 CDD:276965 14/52 (27%)
Kelch_5 423..463 CDD:290565 2/3 (67%)
KELCH repeat 426..470 CDD:276965 97/429 (23%)
hcfc1bNP_001122009.1 PLN02193 9..327 CDD:330882 79/342 (23%)
KELCH repeat 27..74 CDD:276965 17/55 (31%)
KELCH repeat 78..128 CDD:276965 13/55 (24%)
KELCH repeat 194..247 CDD:276965 11/70 (16%)
KELCH repeat 249..313 CDD:276965 16/64 (25%)
Herpes_BLLF1 <340..774 CDD:330317 17/73 (23%)
Atrophin-1 <397..609 CDD:331285 6/15 (40%)
Herpes_BLLF1 <1138..1484 CDD:330317
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.