DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4069 and Fbxo42

DIOPT Version :10

Sequence 1:NP_648590.1 Gene:CG4069 / 39437 FlyBaseID:FBgn0036301 Length:509 Species:Drosophila melanogaster
Sequence 2:NP_001382519.1 Gene:Fbxo42 / 362646 RGDID:1304787 Length:717 Species:Rattus norvegicus


Alignment Length:418 Identity:96/418 - (22%)
Similarity:151/418 - (36%) Gaps:93/418 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 KEGKIEAISESVCPPPTP---RSNFTLVCHPEKEELIMFGGELYTGTKTTVYNDLFFYNTKTVEW 112
            :||.|:..|.:...|.||   |.:.:...:...:.:.:||| ....:....:|||:..:..:.||
  Rat    98 QEGNIQWESRTYPYPGTPITQRFSHSACYYDANQSMYVFGG-CTQSSCNAAFNDLWRLDLNSKEW 161

  Fly   113 -RQLKSPSGPTPRSGHQMVAVASNGGELWMFGGEHASPSQLQFHH----YKDLWKFALKSRKWER 172
             |.|.|.|.|:|::|..:|....   .|.:||| ...||....|.    :.::..::.....|..
  Rat   162 IRPLASGSYPSPKAGATLVVYKD---LLVLFGG-WTRPSPYPLHQPERFFDEIHTYSPSKNWWNC 222

  Fly   173 IAAPNGPSPRSGHRMTVSKKRLFIFGGFHDNNQSYHYFNDVHIFSLESYQWLKAEIGGAIVPSPR 237
            |...:||.|.:||...|...::.:|||...:.|   ..|:|.:..||.:.|.|..|.|. .|.||
  Rat   223 IVTTHGPPPMAGHSSCVIGDKMIVFGGSLGSRQ---MSNEVWVLDLEQWAWSKPNISGP-SPHPR 283

  Fly   238 SGCCIAASPEGKIYVWGGYS--RAAMKKEADRGVTH--------TDMFVLSQDKNAGDADNKYKW 292
            .|.......:..|.:.||..  .|..|   |..:.|        ..:.|.::|..|.:.     |
  Rat   284 GGQSQIVIDDATILILGGCGGPNALFK---DAWLLHMHPGPWAWQPLKVENEDHGAPEL-----W 340

  Fly   293 ---------------------APVKPG-GYKPKPRSSVGCTVAANGKAYTFGGVMDVDEDDEDVH 335
                                 ||:.|. ..:|.|.|:....:....:.|.....:...::...|:
  Rat   341 CHPACRVGQCVVVFSQAPSGRAPLSPSLNSRPSPISATPPALVPETREYRSQSPVRSMDEAPCVN 405

  Fly   336 GQFGDDLLAFDLTSQTWRLQEIQTKSSSAEKKDSEESKDVEMSAVDKPVT---TTTDGIFTVTVG 397
            |::|      .|..:..|    ||.|.|.|...|....|      ..|:.   ..:.|  |..||
  Rat   406 GRWG------TLRPRAQR----QTPSGSREGSLSPARGD------GSPILNGGNLSPG--TAAVG 452

  Fly   398 GPSTSTTPFVSKIPSLFAKPKPTNVPSP 425
            |.|..:               |..|.||
  Rat   453 GASLDS---------------PVQVVSP 465

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4069NP_648590.1 NanM 64..353 CDD:442289 73/328 (22%)
KELCH repeat 69..120 CDD:276965 12/51 (24%)
KELCH repeat 124..179 CDD:276965 11/58 (19%)
KELCH repeat 305..353 CDD:276965 6/47 (13%)
Kelch_5 423..463 CDD:433528 2/3 (67%)
KELCH repeat 426..470 CDD:276965 96/418 (23%)
Fbxo42NP_001382519.1 F-box_FBXO42 47..84 CDD:438882
NanM 110..>321 CDD:442289 58/222 (26%)
KELCH repeat 119..168 CDD:276965 11/49 (22%)
KELCH repeat 174..229 CDD:276965 11/58 (19%)
KELCH repeat 232..271 CDD:276965 11/41 (27%)
Blue background indicates that the domain is not in the aligned region.

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