DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pmm2 and SEC53

DIOPT Version :9

Sequence 1:NP_648589.1 Gene:Pmm2 / 39436 FlyBaseID:FBgn0036300 Length:254 Species:Drosophila melanogaster
Sequence 2:NP_116609.1 Gene:SEC53 / 850499 SGDID:S000001849 Length:254 Species:Saccharomyces cerevisiae


Alignment Length:248 Identity:142/248 - (57%)
Similarity:177/248 - (71%) Gaps:3/248 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KRDEILLLFDVDGTLTMPRSVVTPEFEEFFYSRVKPRATIGIVGGSDLEKMFEQLNGRKILNEFD 71
            ::.|.|:|||||||||..|..|:.|..:.. ::::.:..||.||||||.|..||| |..:|:|||
Yeast    10 EKPETLVLFDVDGTLTPARLTVSEEVRKTL-AKLRNKCCIGFVGGSDLSKQLEQL-GPNVLDEFD 72

  Fly    72 FIFPENGLVQIEGGKEVGKQNIIMHLGEETVKRFINFVLRYLSELDVPIKRGTFIEFRNGMMNVC 136
            :.|.||||.....|||:..|:.|..||||...:...|:||||||:|:|.:||||:||||||:||.
Yeast    73 YSFSENGLTAYRLGKELASQSFINWLGEEKYNKLAVFILRYLSEIDLPKRRGTFLEFRNGMINVS 137

  Fly   137 PIGRQCTREERNMFAEYDIEHKVREKMIKDLKQEFADVDLTYSIGGQISFDVFPHGWDKTYCLRH 201
            ||||..:.||||.|..||.||::|.|.::.||:||.|..||:||||||||||||.||||||||:|
Yeast   138 PIGRNASTEERNEFERYDKEHQIRAKFVEALKKEFPDYGLTFSIGGQISFDVFPAGWDKTYCLQH 202

  Fly   202 IEAHYKFKEIHFFGDKTEPGGNDYEIYSDPRTISHRVYTPKDTQRILTEILEL 254
            :|.. .|||||||||||..|||||||:.|.|||.|.|.:|.||.:||||:..|
Yeast   203 VEKD-GFKEIHFFGDKTMVGGNDYEIFVDERTIGHSVQSPDDTVKILTELFNL 254

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pmm2NP_648589.1 HAD-SF-IIB 12..234 CDD:273651 129/221 (58%)
PMM 33..254 CDD:281343 127/220 (58%)
SEC53NP_116609.1 PMM 35..254 CDD:397425 127/221 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157343186
Domainoid 1 1.000 257 1.000 Domainoid score I318
eggNOG 1 0.900 - - E1_COG0561
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H257
Inparanoid 1 1.050 280 1.000 Inparanoid score I559
Isobase 1 0.950 - 0 Normalized mean entropy S364
OMA 1 1.010 - - QHG53697
OrthoFinder 1 1.000 - - FOG0002294
OrthoInspector 1 1.000 - - oto99681
orthoMCL 1 0.900 - - OOG6_101634
Panther 1 1.100 - - LDO PTHR10466
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R935
SonicParanoid 1 1.000 - - X1518
TreeFam 1 0.960 - -
1615.740

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