DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pmm2 and Pmm1

DIOPT Version :9

Sequence 1:NP_648589.1 Gene:Pmm2 / 39436 FlyBaseID:FBgn0036300 Length:254 Species:Drosophila melanogaster
Sequence 2:NP_001008324.1 Gene:Pmm1 / 300089 RGDID:1310897 Length:262 Species:Rattus norvegicus


Alignment Length:248 Identity:130/248 - (52%)
Similarity:172/248 - (69%) Gaps:3/248 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 ALKRDEILLLFDVDGTLTMPRSVVTPEFEEFFYSRVKPRATIGIVGGSDLEKMFEQL-NGRKILN 68
            |.:::.||.|||||||||..|..:.||...|. .:::.|..||:|||||..|:.||| :|.:::.
  Rat     8 ARRKERILCLFDVDGTLTPARQKIDPEVSAFL-QKLRSRVQIGVVGGSDYSKIAEQLGDGDEVIE 71

  Fly    69 EFDFIFPENGLVQIEGGKEVGKQNIIMHLGEETVKRFINFVLRYLSELDVPIKRGTFIEFRNGMM 133
            :||::|.|||.||.:.|:.:.||.|..|||||.::..|||.|.|::.|.:|.||||||||||||:
  Rat    72 KFDYVFAENGTVQYKHGRLLSKQTIQNHLGEELLQDLINFCLSYMALLRLPKKRGTFIEFRNGML 136

  Fly   134 NVCPIGRQCTREERNMFAEYDIEHKVREKMIKDLKQEFADVDLTYSIGGQISFDVFPHGWDKTYC 198
            |:.||||.||.|||..|:|.|.:.|:|||.:..||.|||...|.:|.||.|||||||.||||.||
  Rat   137 NISPIGRSCTLEERIEFSELDKKEKIREKFVAALKTEFAGKGLRFSRGGMISFDVFPEGWDKRYC 201

  Fly   199 LRHIEAHYKFKEIHFFGDKTEPGGNDYEIYSDPRTISHRVYTPKDTQRILTEI 251
            |..::.. .|..|||||::|.|||||:|||:||||:.|.|.:|:||.:...|:
  Rat   202 LDSLDED-SFDIIHFFGNETSPGGNDFEIYADPRTVGHSVVSPQDTVQRCREL 253

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pmm2NP_648589.1 HAD-SF-IIB 12..234 CDD:273651 121/222 (55%)
PMM 33..254 CDD:281343 115/220 (52%)
Pmm1NP_001008324.1 HAD-SF-IIB 17..238 CDD:273651 121/222 (55%)
PMM 37..256 CDD:281343 115/219 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166338841
Domainoid 1 1.000 253 1.000 Domainoid score I2001
eggNOG 1 0.900 - - E1_COG0561
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 275 1.000 Inparanoid score I2886
OMA 1 1.010 - - QHG53697
OrthoDB 1 1.010 - - D1038583at2759
OrthoFinder 1 1.000 - - FOG0002294
OrthoInspector 1 1.000 - - otm45528
orthoMCL 1 0.900 - - OOG6_101634
Panther 1 1.100 - - O PTHR10466
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1518
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.770

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