DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsf2 and tfa

DIOPT Version :9

Sequence 1:NP_524044.1 Gene:Tsf2 / 39435 FlyBaseID:FBgn0036299 Length:819 Species:Drosophila melanogaster
Sequence 2:NP_001278428.1 Gene:tfa / 30255 ZFINID:ZDB-GENE-980526-35 Length:673 Species:Danio rerio


Alignment Length:818 Identity:227/818 - (27%)
Similarity:352/818 - (43%) Gaps:209/818 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LVFVALVGALCFTL--ANAQHHYDEHKTTRMVWCTKSQAEQYKCQNLTVAIERDRALFDEVFLNL 67
            ::.::|:|.|...|  |:||        .::.||..:|.||.||::|....           .::
Zfish     3 VLLISLLGCLVVALPSASAQ--------KKVKWCVTTQNEQSKCRHLATKA-----------ADI 48

  Fly    68 TCFMAYSADECIHHIDREKAHITTLDAGDVFTAGRYNSLI-PIMQE-KLEGGFADYQSVAVIKKG 130
            .|.:..:..:|:..|......|.|:|..:|||.|..|.|: ||:.| |.|..:|    ||.:|.|
Zfish    49 ECHLQPTVIDCMRSIAAGGTDIVTVDGANVFTGGLNNYLLRPIIAEKKKECCYA----VAAVKAG 109

  Fly   131 SLPDLNNLRDMRNKRVCFPWVGSLAGWIVPI------HTLQREGGMEVVDCNNQVKTAASYFNNS 189
            |..::|.|:...:...|:...|   ||..||      :.:..||..|:     .|:.|.|.|.:|
Zfish   110 SGFNINELKGKSSCHSCYQRSG---GWNTPIGKLIATNKITWEGPNEM-----PVERAVSEFFSS 166

  Fly   190 CAVYSLSDKHNPIGDNSDKLCTLCTGKIPGGRCSSADPYFGYEGAFKCLL-EKGDVAFLRHSTVN 253
            ..|..:|....|      .||..|.|..   .||..:.|||.:|||:||. :.|.|||:.|..:.
Zfish   167 SCVPGVSKPKYP------NLCKACQGDC---SCSHNEKYFGDDGAFQCLKNDNGQVAFVCHHAIP 222

  Fly   254 EMLQTTEFKNIAPDTFELLCRDGRRASINDYRQCNWGQVPADAIVTSSARSFSDRKQYQQFLKRI 318
            |    :|.:|     :||||.||.|.|:.||:.||:.:.||..::   ||:.:|.:.....||:|
Zfish   223 E----SERQN-----YELLCMDGSRKSVEDYKTCNFAREPARTVI---ARTDTDLQYVYDVLKQI 275

  Fly   319 AELYSDGTRDDQSRQGGQSFNSRNNINDQNAYGQFDNNDPYRTQNQYDQYRSERLDSSFAEERNQ 383
            ..  ||                                                           
Zfish   276 PA--SD----------------------------------------------------------- 279

  Fly   384 QDGTNTSILYEKFRIFESKRYGKPNLLFQDSSRALTVIPEDDQSF----TKYLGPAINFIYGIRE 444
                          :|.|:.:|..:|:|.||:..|.::|:...|.    .:|......|..|...
Zfish   280 --------------LFSSQAFGGKDLIFSDSATELMLLPKRTDSLLYLKEEYYEAMQAFKDGNPS 330

  Fly   445 CPV--PAMTLCVTSENELDKCIKMRTALKAHLLKPELICKKMHSHINCMQFIEAGKADISVFDAG 507
            .|.  ..:.:|.....|.:||..:....|:.:|:.        |..:|::.|:..:||....|.|
Zfish   331 APTSQTKLAMCTIGHAEKNKCDSLDHVKKSCILEA--------SVDDCIEKIKRKEADFLAVDGG 387

  Fly   508 DVYTGGLNYDLVPFMSEVYNL--------GEPEYYVVAVAKEDDPDTELTY--LKGKNTCHTGIN 562
            .||..| ...|||.|:|..|.        |...||.|||.::   .:.||:  |:||.:||||:.
Zfish   388 QVYIAG-KCGLVPVMAEQSNSQSCSSGSGGTASYYAVAVVRK---GSGLTWNNLEGKKSCHTGLG 448

  Fly   563 TAAGWTYPMALFISNGWIRPYGCDSVRAAAEYFTKSCVPGAISNEYNTGVPYDSMCDLCHGT--- 624
            .:|||..|.:...        |........::|::.|.|||        .|..:||.||.|:   
Zfish   449 RSAGWKIPESAIC--------GEKDKCTLDKFFSEGCAPGA--------DPTSNMCKLCKGSGKP 497

  Fly   625 --SYRYCRRDASEEYYGHTGAFRCLVEGGGHVAFMKHTTVMESTGGKRKEWWARNALNDDFELLC 687
              ....|:..|.|:|||:.||||||.|..|.|||:|||.|.:.|.||.|: ||::..::||||:|
Zfish   498 VGDESKCKPSAEEQYYGYDGAFRCLAEKAGDVAFIKHTVVGDYTDGKGKD-WAKDLKSEDFELIC 561

  Fly   688 --TDGTRAEIQDYKRCNLGKVKANAVVTRGGVNYNETQMNAYINLLTYAQQLYGRKEVDAFSFSM 750
              |..|..:..|:::|||.:|..:||:||      |...:|.::.|:         ::.:.:..:
Zfish   562 PNTPDTTMKYTDFEKCNLAQVPVHAVITR------EDARSAVVSFLS---------DIQSKNNDL 611

  Fly   751 FSSPIGHYDLIFQDATRQLQVIPPNKRRYDAYLGSDFM 788
            |:|..|. :|:|.|.|:.||.|   |...|.:|...::
Zfish   612 FTSKDGK-NLLFTDGTKCLQEI---KGSVDDFLTKKYI 645

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsf2NP_524044.1 PBP2_transferrin 32..372 CDD:270247 94/348 (27%)
PBP2_transferrin 450..792 CDD:270247 112/356 (31%)
TR_FER 452..790 CDD:214514 112/354 (32%)
tfaNP_001278428.1 Periplasmic_Binding_Protein_Type_2 25..325 CDD:304360 105/418 (25%)
TR_FER 25..322 CDD:214514 105/415 (25%)
Periplasmic_Binding_Protein_Type_2 336..648 CDD:304360 112/358 (31%)
TR_FER 341..653 CDD:214514 112/353 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D125278at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm26146
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR11485
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R7331
SonicParanoid 1 1.000 - - X1208
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
77.050

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