DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsf2 and Trf

DIOPT Version :9

Sequence 1:NP_524044.1 Gene:Tsf2 / 39435 FlyBaseID:FBgn0036299 Length:819 Species:Drosophila melanogaster
Sequence 2:NP_598738.1 Gene:Trf / 22041 MGIID:98821 Length:697 Species:Mus musculus


Alignment Length:828 Identity:247/828 - (29%)
Similarity:365/828 - (44%) Gaps:199/828 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 SLVFVALVGALCFTLANAQHHYDEHKTTRMVWCTKSQAEQYKC----QNLTVAIERDRALFDEVF 64
            :|:..|.:| ||..:.:        ||.:  ||..|:.|..||    .::...:..|..      
Mouse     7 ALLACAALG-LCLAVPD--------KTVK--WCAVSEHENTKCISFRDHMKTVLPPDGP------ 54

  Fly    65 LNLTCFMAYSADECIHHIDREKAHITTLDAGDVFTAG-RYNSLIPIMQE---KLEGGFADYQSVA 125
             .|.|....|..:||..|...:|...|||.|.|:.|| ..|:|.|:..|   .:|.....|.:||
Mouse    55 -RLACVKKTSYPDCIKAISASEADAMTLDGGWVYDAGLTPNNLKPVAAEFYGSVEHPQTYYYAVA 118

  Fly   126 VIKKGSLPDLNNLRDMRNKRVCFPWVGSLAGWIVPIHTL-----QREGGMEVVDCNNQVKTAASY 185
            |:|||:...||.|   ..|:.|...:|..|||::||..|     :....:|        |..:|:
Mouse   119 VVKKGTDFQLNQL---EGKKSCHTGLGRSAGWVIPIGLLFCKLSEPRSPLE--------KAVSSF 172

  Fly   186 FNNSCAVYSLSDKHNPIGD--NSDKLCTLCTGKIPGGRCSSADPYFGYEGAFKCLLE-KGDVAFL 247
            |:.||.         |..|  ...|||.||    ||..|||..|:|||.||||||.: .|||||:
Mouse   173 FSGSCV---------PCADPVAFPKLCQLC----PGCGCSSTQPFFGYVGAFKCLKDGGGDVAFV 224

  Fly   248 RHSTVNEMLQTTEFKNIAPDTFELLCRDGRRASINDYRQCNWGQVPADAIVTSSARSFSDRKQYQ 312
            :|:|:.|:|.    :....|.:||||.|..|..::.|..|...::|:.|:|   ||..:.::...
Mouse   225 KHTTIFEVLP----EKADRDQYELLCLDNTRKPVDQYEDCYLARIPSHAVV---ARKNNGKEDLI 282

  Fly   313 QFLKRIAELYSDGTRDDQSRQGGQSFNSRNNINDQNAYGQFDNNDPYRTQNQYDQYRSERLDSSF 377
            ..:.::|                           |..:|:..:.|                    
Mouse   283 WEILKVA---------------------------QEHFGKGKSKD-------------------- 300

  Fly   378 AEERNQQDGTNTSILYEKFRIFESKRYGKPNLLFQDSSRALTVIPEDDQSFTKYLGPAINFIYGI 442
                              |::|.|. .|| :|||:||:..|..:| ....:..|||.  |::..|
Mouse   301 ------------------FQLFSSP-LGK-DLLFKDSAFGLLRVP-PRMDYRLYLGH--NYVTAI 342

  Fly   443 RE-----CPVPA-----MTLCVTSENELDKCIKMRTALKAHLLKPELICKKMHSHINCMQFIEAG 497
            |.     ||..:     :..|..|..|..||.:.     :.:.:.::.|:...:..:|::.|..|
Mouse   343 RNQQEGVCPEGSIDNSPVKWCALSHLERTKCDEW-----SIISEGKIECESAETTEDCIEKIVNG 402

  Fly   498 KADISVFDAGDVYTGGLNYDLVPFMSEVY---NLGEPE--------YYVVAVAKEDDPDTELTYL 551
            :||....|.|..|..| ...|||.|:|.|   |...|.        ||.|||.|..|.......|
Mouse   403 EADAMTLDGGHAYIAG-QCGLVPVMAEYYESSNCAIPSQQGIFPKGYYAVAVVKASDTSITWNNL 466

  Fly   552 KGKNTCHTGINTAAGWTYPMALFISNGWIRPYGCDSVRAAAEYFTKSCVPGAISNEYNTGVPYDS 616
            |||.:||||::..|||..||.:..:    |...|    ...|:|::.|.||...|        .:
Mouse   467 KGKKSCHTGVDRTAGWNIPMGMLYN----RINHC----KFDEFFSQGCAPGYEKN--------ST 515

  Fly   617 MCDLCHGTSYRYCRRDASEEYYGHTGAFRCLVEGGGHVAFMKHTTVMESTGGKRKEWWARNALND 681
            :||||.|.  ..|..:..|||.|:||||||||| .|.|||:||.||:::|.||....||:|...:
Mouse   516 LCDLCIGP--LKCAPNNKEEYNGYTGAFRCLVE-KGDVAFVKHQTVLDNTEGKNPAEWAKNLKQE 577

  Fly   682 DFELLCTDGTRAEIQDYKRCNLGKVKANAVVTRGGVNYNETQMNAYINLLTYAQQLYGRKEVDAF 746
            ||||||.||||..::|:..|:|.:...:.||:|   .....::.|   :||..:.|:|..:... 
Mouse   578 DFELLCPDGTRKPVKDFASCHLAQAPNHVVVSR---KEKAARVKA---VLTSQETLFGGSDCTG- 635

  Fly   747 SFSMFSSPIGHYDLIFQDATRQLQVIP----PNKRRYDAYLGSDFMRA 790
            :|.:|.|..  .||:|:|.|:....:|    |.|     |||:::|::
Mouse   636 NFCLFKSTT--KDLLFRDDTKCFVKLPEGTTPEK-----YLGAEYMQS 676

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsf2NP_524044.1 PBP2_transferrin 32..372 CDD:270247 100/355 (28%)
PBP2_transferrin 450..792 CDD:270247 120/356 (34%)
TR_FER 452..790 CDD:214514 120/352 (34%)
TrfNP_598738.1 PBP2_transferrin_N 24..344 CDD:270336 118/429 (28%)
Transferrin 25..347 CDD:278817 118/431 (27%)
PBP2_transferrin_C 359..681 CDD:270335 120/357 (34%)
TR_FER 360..682 CDD:214514 120/356 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_28KI0
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D125278at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm42949
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR11485
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R7331
SonicParanoid 1 1.000 - - X1208
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
109.910

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