DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsf2 and Ltf

DIOPT Version :9

Sequence 1:NP_524044.1 Gene:Tsf2 / 39435 FlyBaseID:FBgn0036299 Length:819 Species:Drosophila melanogaster
Sequence 2:NP_032548.2 Gene:Ltf / 17002 MGIID:96837 Length:707 Species:Mus musculus


Alignment Length:837 Identity:239/837 - (28%)
Similarity:355/837 - (42%) Gaps:194/837 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 SLVFVALVGALCFTLANAQHHYDEHKTTRMVWCTKSQAEQYKC---QNLTVAIERDRALFDEVFL 65
            ||:|:..:| ||..           |.|.:.||..|.:|:.||   ||....:...         
Mouse     7 SLIFLEALG-LCLA-----------KATTVQWCAVSNSEEEKCLRWQNEMRKVGGP--------- 50

  Fly    66 NLTCFMAYSADECIHHIDREKAHITTLDAGDVFTAGR--YNSLIPIMQE---KLEGGFADYQSVA 125
            .|:|....|..:||..|...:|...|||.|.:|.||:  | .|.|:..|   ..|.....|.:||
Mouse    51 PLSCVKKSSTRQCIQAIVTNRADAMTLDGGTMFDAGKPPY-KLRPVAAEVYGTKEQPRTHYYAVA 114

  Fly   126 VIKKGSLPDLNNLRDMRNKRVCFPWVGSLAGWIVPIHTLQREGGMEVVDCNN---QVKTAAS-YF 186
            |:|..|...||.|:.:|:   |...:|..|||.:||.||:     ..::.|.   .::.|.| :|
Mouse   115 VVKNSSNFHLNQLQGLRS---CHTGIGRSAGWKIPIGTLR-----PYLNWNGPPASLEEAVSKFF 171

  Fly   187 NNSCAVYSLSDKHNPIGDNSDKLCTLCTGKIPGGRCSSA--DPYFGYEGAFKCLLEK-GDVAFLR 248
            :.||...:..|:.       ..||:.|.| ....:|:|:  :||.||.||.:||.:. |||||.|
Mouse   172 SKSCVPGAQKDRF-------PNLCSSCAG-TGANKCASSPEEPYSGYAGALRCLRDNAGDVAFTR 228

  Fly   249 HSTVNEMLQTTEFKNIAP-DTFELLCRDGRRASINDYRQCNWGQVPADAIVTSSARSFSDRKQYQ 312
            .|||.|     |..|.|. |.::|||.|.....:.:|::|:..|||:.|:|   :||.:|:::  
Mouse   229 GSTVFE-----ELPNKAERDQYKLLCPDNTWKPVTEYKECHLAQVPSHAVV---SRSTNDKEE-- 283

  Fly   313 QFLKRIAELYSDGTRDDQSRQGGQSFNSRNNINDQNAYGQFDNNDPYRTQNQYDQYRSERLDSSF 377
                .|.||.         ||..:.|.                                      
Mouse   284 ----AIWELL---------RQSQEKFG-------------------------------------- 297

  Fly   378 AEERNQQDGTNTSILYEKFRIFESKRYGKPNLLFQDSSRALTVIPEDDQSFTKYLGPAINFIY-- 440
               :.|..|         |::|.|.. |:.:|||::|:.....:|:...     :|..:.|.|  
Mouse   298 ---KKQASG---------FQLFASPS-GQKDLLFKESAIGFVRVPQKVD-----VGLYLTFSYTT 344

  Fly   441 -----GIRECPVPA----MTLCVTSENELDKCIKMRTALKAHLLKPELICKKMHSHINCMQFIEA 496
                 ..::..|.|    :|.|.....|..||.:...|.:.     .:.|....:..:|:..|..
Mouse   345 SIQNLNKKQQDVIASKARVTWCAVGSEEKRKCDQWNRASRG-----RVTCISFPTTEDCIVAIMK 404

  Fly   497 GKADISVFDAGDVYTGGLNYDLVPFMSE-----------VYNLGEPEYYVVAVAKEDDPDTELTY 550
            |.||....|.|.:||.| ...|||.::|           ..|.....|..||..:.:|.....:.
Mouse   405 GDADAMSLDGGYIYTAG-KCGLVPVLAENQKSSKSNGLDCVNRPVEGYLAVAAVRREDAGFTWSS 468

  Fly   551 LKGKNTCHTGINTAAGWTYPMALFISNGWIRPYGCDSVRAAA--EYFTKSCVPGAISNEYNTGVP 613
            |:||.:|||.::..|||..||.|.          .:..|:..  |:|::||.|||        .|
Mouse   469 LRGKKSCHTAVDRTAGWNIPMGLL----------ANQTRSCKFNEFFSQSCAPGA--------DP 515

  Fly   614 YDSMCDLCHG--TSYRYCRRDASEEYYGHTGAFRCLVEGGGHVAFMKHTTVMESTGGKRKEWWAR 676
            ..::|.||.|  .....|..::.|.|.|:|||.|||.|..|:|||:|.:||:::|.||..|.|||
Mouse   516 KSNLCALCIGDEKGENKCAPNSKERYQGYTGALRCLAEKAGNVAFLKDSTVLQNTDGKNTEEWAR 580

  Fly   677 NALNDDFELLCTDGTRAEIQDYKRCNLGKVKANAVVTRGGVNYNETQMNAYINLLTYAQQLYGRK 741
            |....||||||.|.||..:.:.|.|:|.....:|||:|      ..::.....:|...|..:||.
Mouse   581 NLKLKDFELLCLDDTRKPVTEAKNCHLAIAPNHAVVSR------TDKVEVLQQVLLDQQVQFGRN 639

  Fly   742 -EVDAFSFSMFSSPIGHYDLIFQDATRQLQVIPPNKRRYDAYLGSDFMRA-RRITDC 796
             :.....|.:|.|..  .:|:|.|.|..|..| |.|...:.|||.:::.| .|:..|
Mouse   640 GQRCPGEFCLFQSKT--KNLLFNDNTECLAKI-PGKTTSEKYLGKEYVIATERLKQC 693

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsf2NP_524044.1 PBP2_transferrin 32..372 CDD:270247 101/355 (28%)
PBP2_transferrin 450..792 CDD:270247 112/358 (31%)
TR_FER 452..790 CDD:214514 110/353 (31%)
LtfNP_032548.2 PBP2_transferrin_N 23..349 CDD:270336 115/430 (27%)
Transferrin 24..351 CDD:278817 115/431 (27%)
PBP2_transferrin_C 361..691 CDD:270335 113/362 (31%)
TR_FER 363..692 CDD:214514 113/361 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_28KI0
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D125278at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm42949
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11485
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R7331
SonicParanoid 1 1.000 - - X1208
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
109.910

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