DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nst and Pgm1

DIOPT Version :9

Sequence 1:NP_648588.1 Gene:nst / 39434 FlyBaseID:FBgn0036298 Length:549 Species:Drosophila melanogaster
Sequence 2:NP_524675.1 Gene:Pgm1 / 44010 FlyBaseID:FBgn0003076 Length:560 Species:Drosophila melanogaster


Alignment Length:536 Identity:109/536 - (20%)
Similarity:199/536 - (37%) Gaps:138/536 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 GVLAT--LRSRYRGGSVI-GVMITASHN---PEPDNGVKLVDPKGEMLEASWEAIATDLVNVSDQ 104
            |:|:|  :.|..|....: |:::|||||   ||.|.|:|.....|   ..:.:|....:..::.:
  Fly    91 GILSTPAVSSLIRHNKALGGIVLTASHNPGGPENDFGIKFNCENG---GPAPDAFTNHIYKITTE 152

  Fly   105 ELEQQVAKIIKDNNIDVTTSSQVFVGMDNRYHSPRLLKAVADGVIALKGNVKEYGIVTTPMLHYF 169
            ..|.   |::::..||::........:..:..:..::.:||:.|    .:::|  |.....|..|
  Fly   153 IKEY---KLVRNLQIDISKVGVTSFDIAGKPFTVEVIDSVANYV----RHMEE--IFDFAKLKDF 208

  Fly   170 VVAANTKEAYGKPTEEGYYDKLIKAFELLRNGRLENGNYRNSIIYDGANGV-GARKMLQFIKRMK 233
            |    :.:|.|||.:                           :..|..||| |:.....|:.|:.
  Fly   209 V----SGKATGKPLK---------------------------MRIDAMNGVTGSYVREIFLNRLG 242

  Fly   234 GTLNVTVINQGI-GVGKINEDCGADYVK-----VQQSPPKSMPEDVKPYTRCVSVDGDADRVVYF 292
            .|.:..|....: ..|.::.|....|.|     |.|.          .|....:.|||.||.:..
  Fly   243 ATESSVVHTTPLPDFGGLHPDPNLTYAKDLVDTVAQG----------DYDIGAAFDGDGDRNMII 297

  Fly   293 FTDDKGEFHLLDGDRIATLIAGYLMELVTQSEISLRLGLVQTAYANGASTDYIVDQLKFPVSCVP 357
               ....|.:...|.:| :||.|| |.:...:.:...|..: :....::.|.:..:|...|..||
  Fly   298 ---GSKAFFVTPSDSLA-VIAHYL-EAIPYFQKNGVQGFAR-SMPTASAVDLVGRKLGKEVFEVP 356

  Fly   358 TGVKHLHHKALEYDIGVYFEANGHGTI-VFSDNAKATIAQVAQTKESAKTLLLLIDLINETVGDA 421
            ||.|:         .|...:|   |.: :..:.:..|.:...:.|:....:|..|.::..| |..
  Fly   357 TGWKY---------FGNLMDA---GRLCLCGEESFGTGSNHIREKDGIWAVLAWISVMQHT-GKG 408

  Fly   422 ISDMLLVETILNHKGWDV--QDWISSY----------NDL--------------------PNRQL 454
            |.|:|       .:.|.|  :::.:.|          |::                    ..:..
  Fly   409 IEDIL-------KQHWSVYGRNYFTRYDYEECASDPCNEMVATMEKTITAPEFVGKSYSSGGKTY 466

  Fly   455 KVKVQDRNVIETTDAERVCVKPEGLQTEINQVVAKYKRGRSFVRPSGTED---VVRVYAEAATKE 516
            |||..| |...|...::.....:||:      :......|..||.|||..   .||:|.::..||
  Fly   467 KVKEAD-NFSYTDPVDKSVATKQGLR------IVFEDGSRIVVRLSGTGSSGATVRLYIDSYEKE 524

  Fly   517 DTDNLAYEVGLLVQKL 532
               |:..:..::::.|
  Fly   525 ---NVLGQASVMLKPL 537

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nstNP_648588.1 PLN02895 6..539 CDD:215485 109/536 (20%)
PGM3 25..529 CDD:100088 108/531 (20%)
Pgm1NP_524675.1 PLN02307 1..560 CDD:177942 109/536 (20%)
PGM1 6..560 CDD:100087 109/536 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45439082
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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