DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nst and Pgm3

DIOPT Version :9

Sequence 1:NP_648588.1 Gene:nst / 39434 FlyBaseID:FBgn0036298 Length:549 Species:Drosophila melanogaster
Sequence 2:NP_001102242.1 Gene:Pgm3 / 363109 RGDID:1305221 Length:552 Species:Rattus norvegicus


Alignment Length:509 Identity:269/509 - (52%)
Similarity:345/509 - (67%) Gaps:11/509 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 IQYGTAGFRGKAEFLDSVMFRMGVLATLRSRYRGGSVIGVMITASHNPEPDNGVKLVDPKGEMLE 88
            :||||||||..|:.||.:|||||:||.|||: :..|.||||:|||||||.|||||||||.||||.
  Rat    21 LQYGTAGFRTNAQHLDHIMFRMGLLAVLRSK-QTRSTIGVMVTASHNPEEDNGVKLVDPLGEMLA 84

  Fly    89 ASWEAIATDLVNVSDQELEQQVAKIIKDNNIDVTTSSQVFVGMDNRYHSPRLLKAVADGVIALKG 153
            .|||..||.|.:..:|:|.:.:|.|::...:|...::.:.||.|.|..|.:|.::|.|||..|.|
  Rat    85 PSWEEHATRLASAEEQDLPKVLAAIVEREAVDPQQTAFIVVGRDTRPSSEKLSQSVIDGVTVLGG 149

  Fly   154 NVKEYGIVTTPMLHYFVVAANTKEAYGKPTEEGYYDKLIKAF-ELLRNGRLENGNYRNSIIYDGA 217
            ...:||::|||.|||.|...|::..||:.|.|||..||.:|| ||::.... :|:....:..|.|
  Rat   150 QFHDYGLLTTPQLHYMVYCRNSEGRYGQATIEGYCQKLSRAFVELMKQASC-SGDGSRWVKVDCA 213

  Fly   218 NGVGARKMLQFIKRMKGTLNVTVINQGIGVGKINEDCGADYVKVQQSPPKSMPEDVKPYTRCVSV 282
            ||:||.|:.:.....:..|:|.:.|.|. .|::|..||||:||.||.||:.|.  :||..||.|.
  Rat   214 NGIGALKLKEMEHYFRQGLSVLLFNDGT-EGRLNHLCGADFVKSQQKPPQGMA--MKPGDRCCSF 275

  Fly   283 DGDADRVVYFFTDDKGEFHLLDGDRIATLIAGYLMELVTQSEISLRLGLVQTAYANGASTDYIVD 347
            ||||||:||::.|..|.|||:|||:|||||:.:|.||:.:...:|.:|:||||||||:||.|:.:
  Rat   276 DGDADRIVYYYCDAAGRFHLIDGDKIATLISSFLKELLLEIGENLNIGVVQTAYANGSSTRYLEE 340

  Fly   348 QLKFPVSCVPTGVKHLHHKALEYDIGVYFEANGHGTIVFSDNAKATIAQVAQTKE-----SAKTL 407
            .:|.||.|..||||||||||.|:|||||||||||||.:||:..:|.|.::||..|     :|:.|
  Rat   341 VMKVPVYCTKTGVKHLHHKAQEFDIGVYFEANGHGTALFSEAVEARIKRLAQELEDEKGRAARML 405

  Fly   408 LLLIDLINETVGDAISDMLLVETILNHKGWDVQDWISSYNDLPNRQLKVKVQDRNVIETTDAERV 472
            ...|||.|:..||||||||::|.||..||..||.|.:.|.|||||||||||.||.||.||||||.
  Rat   406 ASFIDLFNQAAGDAISDMLVIEAILALKGLSVQQWDAIYADLPNRQLKVKVADRRVISTTDAERQ 470

  Fly   473 CVKPEGLQTEINQVVAKYKRGRSFVRPSGTEDVVRVYAEAATKEDTDNLAYEVG 526
            .|.|.|||..||.:|.|||..|:|||||||||||||||||.::...|.....||
  Rat   471 AVTPPGLQEAINDLVKKYKLARAFVRPSGTEDVVRVYAEATSQVSWDQSTDRVG 524

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nstNP_648588.1 PLN02895 6..539 CDD:215485 269/509 (53%)
PGM3 25..529 CDD:100088 269/508 (53%)
Pgm3NP_001102242.1 PLN02895 1..523 CDD:215485 267/506 (53%)
PGM3 22..525 CDD:100088 269/508 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166334341
Domainoid 1 1.000 269 1.000 Domainoid score I1780
eggNOG 1 0.900 - - E1_COG1109
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H9205
Inparanoid 1 1.050 501 1.000 Inparanoid score I1308
OMA 1 1.010 - - QHG56540
OrthoDB 1 1.010 - - D231157at33208
OrthoFinder 1 1.000 - - FOG0003921
OrthoInspector 1 1.000 - - oto98875
orthoMCL 1 0.900 - - OOG6_102413
Panther 1 1.100 - - LDO PTHR45955
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2227
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.770

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