DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nst and Pgm2a

DIOPT Version :9

Sequence 1:NP_648588.1 Gene:nst / 39434 FlyBaseID:FBgn0036298 Length:549 Species:Drosophila melanogaster
Sequence 2:NP_610453.1 Gene:Pgm2a / 35923 FlyBaseID:FBgn0033377 Length:623 Species:Drosophila melanogaster


Alignment Length:589 Identity:123/589 - (20%)
Similarity:203/589 - (34%) Gaps:168/589 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 FAREMYPKT---SKETIQYGTAGFRGKAEF--LDSVMF----------------RMGVLATLRSR 54
            :.:|.||..   |...|.:|..|......|  |.:::|                .|...|.||.:
  Fly    96 YIKEQYPDPADWSGRGIVFGYDGRYNSHRFAELSAIVFLNNDFKVWLFKRYVATPMVPFAILRLQ 160

  Fly    55 YRGGSVIGVMITASHNPEPDNGVKLVDPKGEMLEASWEAIATDLVNVSDQELEQQVAKIIKDNNI 119
                .:.|||:||||||:.|||.|:....|           ..::...|:.:::.:.     ||:
  Fly   161 ----CLAGVMVTASHNPKEDNGYKVYWTNG-----------AQIIPPHDEGIQESIL-----NNL 205

  Fly   120 DVTTSSQVFVGMDNRYHSPRLLKAVADGVIALKGNVKEYGIVTTPMLHYFVVAANTKEAYGKPTE 184
            :...||    ..|:...|..:|:             ..|.||..|                    
  Fly   206 EPKGSS----WDDSAMCSNTMLE-------------DPYDIVVPP-------------------- 233

  Fly   185 EGYYDKLIKAFELLRNGRLENGNYRNSIIYDGANGVGARKMLQFIKRMKGTLNVTVINQGIGVGK 249
              |:|.|.|  :|.......||....|..|...:|||    ..|:|:....:|:           
  Fly   234 --YFDILKK--QLPCTSLEANGRCSLSFTYTAMHGVG----YAFVKQAFARINL----------- 279

  Fly   250 INEDCGADYVKV--QQSPPKSMPEDVKPYTR--------------------CVSVDGDADRVVYF 292
                  ..::.|  ||.|....|....|...                    .::.|.||||:...
  Fly   280 ------KPFISVCEQQEPDPEFPTTPMPNPEEGKTSLDLSIKTAKANSSQIILANDPDADRLAVA 338

  Fly   293 FTDDKGEFHLLDGDRIATLIAGYLMELVTQSE----ISLRLGLVQTAYANGASTDYIVDQLKFPV 353
            ...:.|.:.|..|:.:..|:..:.:||....|    :|..:.:..|  .:......:.::..|..
  Fly   339 EVREDGSYKLFSGNEVGALLGWWSLELHKMREPDCDVSNCVMIAST--VSSKILRAMAEREGFQF 401

  Fly   354 SCVPTGVKHLHHKALEYD------IGVYFEANGH--GTIVFSDNA------KATIAQVAQTKESA 404
            ....||.|.:.:||:|..      :..:.||.|.  ||.|...:.      .||:|...:.| ..
  Fly   402 FETLTGFKWMGNKAIELQQAGKTVLFAFEEAIGFMVGTTVLDKDGVSAAGHLATMACYLRCK-LC 465

  Fly   405 KTLLLLIDLINETVG--DAISDMLL------VETILNH-KGWDVQDWISSYNDLPNRQLKVKVQD 460
            .||...:..|.||.|  ..:|..::      :|.|... :.|| :....:|   |...|..:.:.
  Fly   466 MTLQEKLRDIYETYGFHTTVSSYVICRCPPVIEQIFERLRTWD-EGKADTY---PTSILNGEYEI 526

  Fly   461 RNV------IETTDAERVCVKPEGLQTEINQVVAKYKRGRSF-VRPSGTEDVVRVYAEAATKEDT 518
            .||      .:::..::....|....:::  :...:|.|... :|.||||..::.|||...|.|.
  Fly   527 ENVRDLTTGFDSSTGDKKATLPTSSSSQM--ITFTFKNGLVVTLRTSGTEPKMKYYAEMCGKPDE 589

  Fly   519 DNLA 522
            .|.|
  Fly   590 KNWA 593

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nstNP_648588.1 PLN02895 6..539 CDD:215485 123/589 (21%)
PGM3 25..529 CDD:100088 118/572 (21%)
Pgm2aNP_610453.1 PTZ00150 23..623 CDD:240294 123/589 (21%)
PGM2 62..604 CDD:100092 123/589 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45439078
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1109
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.830

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