DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nst and pgm3

DIOPT Version :9

Sequence 1:NP_648588.1 Gene:nst / 39434 FlyBaseID:FBgn0036298 Length:549 Species:Drosophila melanogaster
Sequence 2:XP_012818211.2 Gene:pgm3 / 100158504 XenbaseID:XB-GENE-991601 Length:584 Species:Xenopus tropicalis


Alignment Length:520 Identity:293/520 - (56%)
Similarity:364/520 - (70%) Gaps:10/520 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 IQYGTAGFRGKAEFLDSVMFRMGVLATLRSRYRGGSVIGVMITASHNPEPDNGVKLVDPKGEMLE 88
            :||||||||.|||.||.||:|||:||.|||: :..||||||:|||||||.|||||||||.||||.
 Frog    63 LQYGTAGFRTKAEHLDHVMYRMGLLAVLRSK-KTKSVIGVMVTASHNPEEDNGVKLVDPMGEMLA 126

  Fly    89 ASWEAIATDLVNVSDQELEQQVAKIIKDNNIDVTTSSQVFVGMDNRYHSPRLLKAVADGVIALKG 153
            ..||..||:|.|....||:..:..||:..:|.:...:.|.:|.|.|..|..|..||.|||.||..
 Frog   127 QEWEVYATNLANAEQHELQAVLNDIIQKESISLQQEASVAIGRDTRPSSENLAYAVIDGVTALNS 191

  Fly   154 NVKEYGIVTTPMLHYFVVAANTKEAYGKPTEEGYYDKLIKAFELLRNGRLENGNYRNSIIYDGAN 218
            ...:||:||||.|||.|...||:..||.||.||||:||..||..|.....:.|:....:..||||
 Frog   192 KYHDYGLVTTPQLHYIVCCCNTEGGYGTPTLEGYYNKLSSAFNSLVKQAHDQGDKNKCLSVDGAN 256

  Fly   219 GVGARKMLQFIKRMKGTLNVTVINQGIGVGKINEDCGADYVKVQQSPPKSMPEDVKPYTRCVSVD 283
            |:||.|:.:..|.::.|.::.:.|.|.| ||:|..||||||||||.|||.:  ::|...||.|.|
 Frog   257 GIGALKLKEMEKYLQSTFSIQLYNDGSG-GKLNHLCGADYVKVQQKPPKGV--EIKSGERCCSFD 318

  Fly   284 GDADRVVYFFTDDKGEFHLLDGDRIATLIAGYLMELVTQSEISLRLGLVQTAYANGASTDYIVDQ 348
            |||||:||::.|..|.|||||||:|||||:.::.||:.:.::||::.:||||||||:||.|:.:.
 Frog   319 GDADRIVYYYNDSVGCFHLLDGDKIATLISTFIKELLVKVDLSLKMAVVQTAYANGSSTRYLEEV 383

  Fly   349 LKFPVSCVPTGVKHLHHKALEYDIGVYFEANGHGTIVFSDNAKATIAQVA------QTKESAKTL 407
            :|.||.|..||||||||||.|:|||||||||||||::||..|...|..:|      :.|.:|..|
 Frog   384 MKVPVYCTKTGVKHLHHKAQEFDIGVYFEANGHGTVLFSKTAGEQIRHLANMEQNDEKKTAANML 448

  Fly   408 LLLIDLINETVGDAISDMLLVETILNHKGWDVQDWISSYNDLPNRQLKVKVQDRNVIETTDAERV 472
            |..:||||:||||||||||::|.||:.||:.||.|...|.|||||||||||.||.||:||||||.
 Frog   449 LNTVDLINQTVGDAISDMLVIEAILSIKGFTVQKWDEIYTDLPNRQLKVKVADRRVIDTTDAERR 513

  Fly   473 CVKPEGLQTEINQVVAKYKRGRSFVRPSGTEDVVRVYAEAATKEDTDNLAYEVGLLVQKLAGGVG 537
            .|||.|||.:|:.:|.||...|||||||||||||||||||.|:|:.|.||:||.|.|..:|||||
 Frog   514 TVKPPGLQDKIDDLVKKYSMSRSFVRPSGTEDVVRVYAEADTQENADRLAHEVSLAVFHIAGGVG 578

  Fly   538  537
             Frog   579  578

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nstNP_648588.1 PLN02895 6..539 CDD:215485 293/520 (56%)
PGM3 25..529 CDD:100088 287/509 (56%)
pgm3XP_012818211.2 PGM3 64..570 CDD:100088 287/509 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 298 1.000 Domainoid score I1438
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H9205
Inparanoid 1 1.050 539 1.000 Inparanoid score I1162
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D231157at33208
OrthoFinder 1 1.000 - - FOG0003921
OrthoInspector 1 1.000 - - oto105566
Panther 1 1.100 - - LDO PTHR45955
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2021
SonicParanoid 1 1.000 - - X2227
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
99.190

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