DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gcn5 and pbrm1l

DIOPT Version :9

Sequence 1:NP_648586.2 Gene:Gcn5 / 39431 FlyBaseID:FBgn0020388 Length:813 Species:Drosophila melanogaster
Sequence 2:XP_005168819.1 Gene:pbrm1l / 445141 ZFINID:ZDB-GENE-010501-3 Length:1657 Species:Danio rerio


Alignment Length:515 Identity:104/515 - (20%)
Similarity:178/515 - (34%) Gaps:167/515 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   389 PSAASIGGN-KRTSVGEPLHKRIKKEPTDRPSSENL--------------DDLPADVVMRAMKSV 438
            ||:::.||: ...|...|:....::..::.||.:.:              ||....:....:::.
Zfish    11 PSSSASGGDFDDASSSTPVSGWKRRRASNAPSVDQIAVCHELYNTVRDYKDDQGRQICELFVRAP 75

  Fly   439 SESKTTNKAEILF-PVNVSR-DENVKAEE----QKRAIEFHVVGNSLTKPVDKQTVLWLLGLQLV 497
            ......:..||:. |:::.: .:.::|||    ::.:.:||::.|: ||..              
Zfish    76 KRRNQPDYYEIVSQPIDMMKIQQKLRAEEYQDVEQFSADFHLLINN-TKAY-------------- 125

  Fly   498 FAYQLPEMPREYISQL--VF----------------------DTKHKTLALIKENQPIGGICFRP 538
              ||.........|:|  ||                      :....|.|.::|.:|        
Zfish   126 --YQADSAEHRAASKLLNVFLSAKNELLQGGDGEEAEDDEESEDAENTNASMEEERP-------- 180

  Fly   539 FPSQGFTEIVFCAVTMSEQVKGYGTHLMNHLKDYSIQRGIKHLLTFADC-DAIGYFKKQGFSK-D 601
             ||                   |...::..|           |...|.| |:.|....:.|.| .
Zfish   181 -PS-------------------YLKAILEQL-----------LEAIASCTDSSGRLVSELFQKLP 214

  Fly   602 IKLARPVYAGYIKE---------------YDSATLMHCELHPSIVNTQFIAVIRSQ----SEILK 647
            .||..|.|...|||               |.|.:.|..::...:.|.:......||    :..:|
Zfish   215 SKLHYPDYYAVIKEPIDLRAVAQKIQGGHYKSISAMAKDIDLLVKNAKTYNEPGSQVFKDANTIK 279

  Fly   648 ELIAQRHNEVQKVRPGLTCFK---------EGLPVIPVESIPGLREIGWKPQNRPARSSRPLEES 703
            ::.|||..|:::..|..|..:         :.|..|.:....|               |...|:|
Zfish   280 KVFAQRKIEIEQAEPTKTSLRIRNRRSAQGDRLSAITMALQAG---------------SESDEDS 329

  Fly   704 T---------------------DPEKLATSFASVLQSVRQHTTAWPFLRPVTAAEVPDYYDHIKY 747
            .                     ||..|........:||:....:.|||:..:..|.||||..||.
Zfish   330 ILTGTVRYDTGETEADCGLSAGDPILLLYQAVRGARSVQGLLLSEPFLQLPSRREYPDYYHQIKN 394

  Fly   748 PMDLKTMGERLKKGYYQTRRLFMADMARIFSNCRFYNSPDTEYYRCANSLERYFQTKMRE 807
            |:.|:.:.|::|.|.|:......||::.:|.|.|.||.|::..|:.|..|:...|.|.||
Zfish   395 PISLQQIREKMKNGDYEAVEQIEADLSVMFENARRYNMPNSTIYKRAQRLQLIMQQKKRE 454

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gcn5NP_648586.2 PCAF_N 73..322 CDD:283997
COG5076 451..807 CDD:227408 90/436 (21%)
Acetyltransf_1 526..598 CDD:278980 11/72 (15%)
Bromo_gcn5_like 708..808 CDD:99941 34/100 (34%)
pbrm1lXP_005168819.1 Bromo_polybromo_I 43..152 CDD:99954 19/125 (15%)
Bromo_polybromo_II 184..286 CDD:99948 24/112 (21%)
Bromo_polybromo_III 352..452 CDD:99951 33/99 (33%)
Bromo_polybromo_IV 485..585 CDD:99949
Bromo_polybromo_V 624..723 CDD:99946
Bromo_polybromo_VI 746..853 CDD:99956
BAH_polybromo 933..1049 CDD:240068
BAH_polybromo 1123..1241 CDD:240068
HMG-box 1346..1408 CDD:238037
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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