DRSC/TRiP Functional Genomics Resources

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Protein Alignment tral and SCD6

DIOPT Version :9

Sequence 1:NP_001261775.1 Gene:tral / 39430 FlyBaseID:FBgn0041775 Length:657 Species:Drosophila melanogaster
Sequence 2:NP_015454.1 Gene:SCD6 / 856247 SGDID:S000006333 Length:349 Species:Saccharomyces cerevisiae


Alignment Length:598 Identity:122/598 - (20%)
Similarity:175/598 - (29%) Gaps:289/598 - (48%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 LGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDT--QFQIAPQSQIYDYILFRGS 70
            :|..|||||..|.||.|.|..:|.::.|:.|..||.||||.|..  ..:|.|...:|:.:.|.||
Yeast     5 IGKTISLISVTDNRYVGLLEDIDSEKGTVTLKEVRCFGTEGRKNWGPEEIYPNPTVYNSVKFNGS 69

  Fly    71 DIKDIRVVNNHTLPHHNDPAIMQAQLQNGPPQMPQHFPMPSGMSGPPQQQQVPSQQPPQMPSGGG 135
            ::||:              :|:.|.:.:..|.:||  .||.....||||.|.|.|...|      
Yeast    70 EVKDL--------------SILDANINDIQPVVPQ--MMPPASQFPPQQAQSPPQAQAQ------ 112

  Fly   136 SGGAGGAGAPGGGGPGYGNGNPFGNLGGPNLANMVGNAGGSLAPGSGAPGSGPFMHIGGNQQQPK 200
                                                                  .|:..|.|.||
Yeast   113 ------------------------------------------------------AHVQTNPQVPK 123

  Fly   201 PQQQKQPISVLDMLAGASRSTTPISL----IVSPTAELTQQQQLHQQQNAGQGGNGRDAGHKRQN 261
            |:                 |..|.::    :.:||:..|....::                    
Yeast   124 PE-----------------SNVPAAVAGYGVYTPTSTETATASMN-------------------- 151

  Fly   262 HQQQQNQQHQQRGGPSHNNMQQQQQRGGGSGTDFYNQQRDRRDSGRQMDNNYSNNYNNNNNNQRN 326
                                                      |.....|.|.::           
Yeast   152 ------------------------------------------DKSTPQDTNVNS----------- 163

  Fly   327 RGGGNGMQQQQRGGNGGSGGGGGNGGGNNPAWNMHRGNQNSNNMMNMRNRGMGSRGPMRPNQGYR 391
                   |.::||.|          |.|.|.:              .||:...|..|.:.|:.::
Yeast   164 -------QSRERGKN----------GENEPKY--------------QRNKNRSSNRPPQSNRNFK 197

  Fly   392 PQSANNQNKPRNKIKFEGDFDFEQANNKFEELRSQLAKLKVAEDGAPKPATNATAATATATNEQV 456
            ....|.            ||||:..|.||                                    
Yeast   198 VDIPNE------------DFDFQSNNAKF------------------------------------ 214

  Fly   457 GEKVEGVHTLNGETDKKDDSGNETGAGEHEPEEDDVAVCYDKTKSFFDNISCEAAQDRSKNKKND 521
                    |....||.:.:  .|..:..|:.:|.|... |:|..||||.||...    ..|....
Yeast   215 --------TKGDSTDVEKE--KELESAVHKQDESDEQF-YNKKSSFFDTISTST----ETNTNMR 264

  Fly   522 WRQERKLNTETFGVSSTR-----RGSSYRGRNQYYNNNGNGGINSGYGGAPGYNRNNYRMGGGGG 581
            |::|:.||.:|||.:|.|     ||.. |||..|..|.||.|                 .||..|
Yeast   265 WQEEKMLNVDTFGQASARPRFHSRGLG-RGRGNYRGNRGNRG-----------------RGGQRG 311

  Fly   582 NFRNRSNNRNNGG 594
            |::||:|.:|:.|
Yeast   312 NYQNRNNYQNDSG 324

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tralNP_001261775.1 LSm14_N 4..77 CDD:212483 29/70 (41%)
FDF 406..536 CDD:286601 30/129 (23%)
SCD6NP_015454.1 LSm14_N 1..76 CDD:212483 29/84 (35%)
FDF 200..278 CDD:370547 30/140 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157344773
Domainoid 1 1.000 57 1.000 Domainoid score I2677
eggNOG 1 0.900 - - E1_KOG1073
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001497
OrthoInspector 1 1.000 - - oto98999
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR13586
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2277
SonicParanoid 1 1.000 - - X1222
TreeFam 1 0.960 - -
98.920

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